Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MT-ND4P03905 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MT-ND4P03905 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MT-ND4P03905 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MT-ND4P03905 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
MT-ND4P03905 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.11■□□□□ 0.81
MT-ND4P03905 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MT-ND4P03905 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MT-ND4P03905 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MT-ND4P03905 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MT-ND4P03905 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MT-ND4P03905 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MT-ND4P03905 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
MT-ND4P03905 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MT-ND4P03905 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MT-ND4P03905 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MT-ND4P03905 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.09■□□□□ 0.81
MT-ND4P03905 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.09■□□□□ 0.81
MT-ND4P03905 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MT-ND4P03905 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
MT-ND4P03905 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MT-ND4P03905 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.81
MT-ND4P03905 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.08■□□□□ 0.81
MT-ND4P03905 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MT-ND4P03905 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.08■□□□□ 0.81
MT-ND4P03905 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.08■□□□□ 0.81
MT-ND4P03905 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MT-ND4P03905 AL157400.5-201ENST00000507624 621 ntBASIC20.08■□□□□ 0.81
MT-ND4P03905 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
MT-ND4P03905 AC060814.1-201ENST00000554326 538 ntBASIC20.08■□□□□ 0.81
MT-ND4P03905 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MT-ND4P03905 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MT-ND4P03905 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.07■□□□□ 0.8
MT-ND4P03905 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MT-ND4P03905 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.07■□□□□ 0.8
MT-ND4P03905 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.07■□□□□ 0.8
MT-ND4P03905 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.07■□□□□ 0.8
MT-ND4P03905 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MT-ND4P03905 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
MT-ND4P03905 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MT-ND4P03905 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MT-ND4P03905 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MT-ND4P03905 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.06■□□□□ 0.8
MT-ND4P03905 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MT-ND4P03905 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.06■□□□□ 0.8
MT-ND4P03905 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MT-ND4P03905 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MT-ND4P03905 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MT-ND4P03905 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MT-ND4P03905 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
MT-ND4P03905 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
MT-ND4P03905 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.05■□□□□ 0.8
MT-ND4P03905 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.05■□□□□ 0.8
MT-ND4P03905 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.05■□□□□ 0.8
MT-ND4P03905 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MT-ND4P03905 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.04■□□□□ 0.8
MT-ND4P03905 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MT-ND4P03905 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
MT-ND4P03905 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MT-ND4P03905 EP400NL-214ENST00000641289 2402 ntBASIC20.04■□□□□ 0.8
MT-ND4P03905 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
MT-ND4P03905 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MT-ND4P03905 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.04■□□□□ 0.8
MT-ND4P03905 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.04■□□□□ 0.8
MT-ND4P03905 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MT-ND4P03905 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MT-ND4P03905 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.04■□□□□ 0.8
MT-ND4P03905 AC025884.2-201ENST00000553429 711 ntBASIC20.04■□□□□ 0.8
MT-ND4P03905 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.04■□□□□ 0.8
MT-ND4P03905 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MT-ND4P03905 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MT-ND4P03905 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MT-ND4P03905 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MT-ND4P03905 LINC00565-201ENST00000562710 2331 ntBASIC20.03■□□□□ 0.8
MT-ND4P03905 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.03■□□□□ 0.8
MT-ND4P03905 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MT-ND4P03905 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
MT-ND4P03905 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MT-ND4P03905 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
MT-ND4P03905 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MT-ND4P03905 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
MT-ND4P03905 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.02■□□□□ 0.8
MT-ND4P03905 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MT-ND4P03905 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MT-ND4P03905 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.02■□□□□ 0.8
MT-ND4P03905 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.02■□□□□ 0.8
MT-ND4P03905 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MT-ND4P03905 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.02■□□□□ 0.79
MT-ND4P03905 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.02■□□□□ 0.79
MT-ND4P03905 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MT-ND4P03905 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MT-ND4P03905 SMPD5-203ENST00000639008 1464 ntBASIC20.01■□□□□ 0.79
MT-ND4P03905 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MT-ND4P03905 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.01■□□□□ 0.79
MT-ND4P03905 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MT-ND4P03905 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MT-ND4P03905 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
MT-ND4P03905 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20■□□□□ 0.79
MT-ND4P03905 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
MT-ND4P03905 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms