Protein–RNA interactions for Protein: A0A5B7

TCRBV4S1A1T, T-cell receptor beta variable 29-1 (Fragment), humanhuman

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV4S1A1TA0A5B7 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
TCRBV4S1A1TA0A5B7 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.58□□□□□ -0.39
TCRBV4S1A1TA0A5B7 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
TCRBV4S1A1TA0A5B7 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
TCRBV4S1A1TA0A5B7 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
TCRBV4S1A1TA0A5B7 AC105250.1-201ENST00000509378 2057 ntBASIC12.58□□□□□ -0.39
TCRBV4S1A1TA0A5B7 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC12.58□□□□□ -0.39
TCRBV4S1A1TA0A5B7 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
TCRBV4S1A1TA0A5B7 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 AC009407.1-201ENST00000568958 598 ntBASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 MIR6069-201ENST00000620069 79 ntBASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 AC090616.6-203ENST00000579186 1945 ntBASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 AC007541.1-201ENST00000570282 1469 ntBASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC12.58□□□□□ -0.4
TCRBV4S1A1TA0A5B7 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 IMPDH1P4-201ENST00000445028 1534 ntBASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
TCRBV4S1A1TA0A5B7 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms