Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.75■□□□□ 0.11
VIMP08670 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 IER3-202ENST00000376377 1350 ntBASIC15.75■□□□□ 0.11
VIMP08670 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC15.75■□□□□ 0.11
VIMP08670 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.75■□□□□ 0.11
VIMP08670 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
VIMP08670 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.75■□□□□ 0.11
VIMP08670 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.75■□□□□ 0.11
VIMP08670 PMS2P4-201ENST00000412466 1052 ntBASIC15.75■□□□□ 0.11
VIMP08670 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
VIMP08670 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
VIMP08670 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
VIMP08670 MTDHP4-201ENST00000600287 670 ntBASIC15.75■□□□□ 0.11
VIMP08670 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
VIMP08670 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.75■□□□□ 0.11
VIMP08670 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC15.75■□□□□ 0.11
VIMP08670 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
VIMP08670 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.75■□□□□ 0.11
VIMP08670 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC15.75■□□□□ 0.11
VIMP08670 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
VIMP08670 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VIMP08670 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
VIMP08670 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.74■□□□□ 0.11
VIMP08670 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.74■□□□□ 0.11
VIMP08670 RPS15P9-201ENST00000494093 319 ntBASIC15.74■□□□□ 0.11
VIMP08670 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.74■□□□□ 0.11
VIMP08670 MIR4515-201ENST00000584082 81 ntBASIC15.74■□□□□ 0.11
VIMP08670 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.74■□□□□ 0.11
VIMP08670 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC15.74■□□□□ 0.11
VIMP08670 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
VIMP08670 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.74■□□□□ 0.11
VIMP08670 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
VIMP08670 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VIMP08670 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.74■□□□□ 0.11
VIMP08670 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.74■□□□□ 0.11
VIMP08670 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VIMP08670 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 AL589702.1-201ENST00000641229 1509 ntBASIC15.73■□□□□ 0.11
VIMP08670 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC15.73■□□□□ 0.11
VIMP08670 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.73■□□□□ 0.11
VIMP08670 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms