RNA–Protein interactions for RNA: ENST00000330394.2

EPHB3-201, Transcript of EPH receptor B3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EPHB3, Length 4,236 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3-201ENST00000330394 NISCHQ9Y2I1 1504 aa24.12■■□□□ 1.45
EPHB3-201ENST00000330394 DCAF8L2P0C7V8 631 aa23.68■■□□□ 1.38
EPHB3-201ENST00000330394 SUPT5HO00267 1087 aaKnown RBP23.62■■□□□ 1.37
EPHB3-201ENST00000330394 SHROOM4Q9ULL8 1493 aa23.25■■□□□ 1.31
EPHB3-201ENST00000330394 PCGF6Q9BYE7 350 aa22.86■■□□□ 1.25
EPHB3-201ENST00000330394 EHMT2Q96KQ7 1210 aa22.72■■□□□ 1.23
EPHB3-201ENST00000330394 FAM9AQ8IZU1 332 aaPredicted RBP22.21■■□□□ 1.15
EPHB3-201ENST00000330394 HRCP23327 699 aa22.18■■□□□ 1.14
EPHB3-201ENST00000330394 PPARGC1BQ86YN6 1023 aaKnown RBP22.07■■□□□ 1.12
EPHB3-201ENST00000330394 TTBK1Q5TCY1 1321 aaPredicted RBP22.03■■□□□ 1.12
EPHB3-201ENST00000330394 PELP1Q8IZL8 1130 aaKnown RBP21.97■■□□□ 1.11
EPHB3-201ENST00000330394 ZEB1P37275 1124 aaPredicted RBP21.8■■□□□ 1.08
EPHB3-201ENST00000330394 CENPBP07199 599 aaPredicted RBP21.76■■□□□ 1.07
EPHB3-201ENST00000330394 LOC105371045A0A1W2PR82 267 aa21.74■■□□□ 1.07
EPHB3-201ENST00000330394 CCER1Q8TC90 406 aaPredicted RBP21.74■■□□□ 1.07
EPHB3-201ENST00000330394 CHIC1Q5VXU3 224 aa21.67■■□□□ 1.06
EPHB3-201ENST00000330394 TRIM26Q12899 539 aaPredicted RBP21.63■■□□□ 1.05
EPHB3-201ENST00000330394 TRIM41Q8WV44 630 aa21.63■■□□□ 1.05
EPHB3-201ENST00000330394 YTHDC1Q96MU7 727 aaKnown RBP21.62■■□□□ 1.05
EPHB3-201ENST00000330394 APLP2Q06481 763 aa21.4■■□□□ 1.02
EPHB3-201ENST00000330394 RANGAP1P46060 587 aaPredicted RBP21.32■■□□□ 1
EPHB3-201ENST00000330394 MYT1Q01538 1121 aa21.31■■□□□ 1
EPHB3-201ENST00000330394 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.15■□□□□ 0.98
EPHB3-201ENST00000330394 UBTFP17480 764 aaKnown RBP21.11■□□□□ 0.97
EPHB3-201ENST00000330394 GTF3C3Q9Y5Q9 886 aa21.02■□□□□ 0.96
EPHB3-201ENST00000330394 DIEXFQ68CQ4 756 aaKnown RBP21.02■□□□□ 0.95
EPHB3-201ENST00000330394 ERICH6Q7L0X2 663 aa20.99■□□□□ 0.95
EPHB3-201ENST00000330394 HNRNPUL2Q1KMD3 747 aaKnown RBP20.86■□□□□ 0.93
EPHB3-201ENST00000330394 NEFLP07196 543 aa20.8■□□□□ 0.92
EPHB3-201ENST00000330394 ACIN1Q9UKV3 1341 aaKnown RBP20.76■□□□□ 0.91
EPHB3-201ENST00000330394 SCAF1Q9H7N4 1312 aaKnown RBP20.73■□□□□ 0.91
EPHB3-201ENST00000330394 ATP1B4Q9UN42 357 aaPredicted RBP20.67■□□□□ 0.9
EPHB3-201ENST00000330394 ITGAEP38570 1179 aa20.63■□□□□ 0.89
EPHB3-201ENST00000330394 NEUROD1Q13562 356 aa20.59■□□□□ 0.89
EPHB3-201ENST00000330394 MYO15BQ96JP2 1530 aa20.52■□□□□ 0.88
EPHB3-201ENST00000330394 BCANQ96GW7 911 aa20.51■□□□□ 0.87
EPHB3-201ENST00000330394 ZNF316A6NFI3 1004 aaPredicted RBP20.42■□□□□ 0.86
EPHB3-201ENST00000330394 DCAF1Q9Y4B6 1507 aa20.37■□□□□ 0.85
EPHB3-201ENST00000330394 CNGB1Q14028 1251 aaPredicted RBP20.3■□□□□ 0.84
EPHB3-201ENST00000330394 POLR3GLQ9BT43 218 aa20.13■□□□□ 0.81
EPHB3-201ENST00000330394 ZCCHC6Q5VYS8 1495 aaKnown RBP20.12■□□□□ 0.81
EPHB3-201ENST00000330394 ABCC9O60706 1549 aa20.09■□□□□ 0.81
EPHB3-201ENST00000330394 MIER1Q8N108 512 aa20.07■□□□□ 0.8
EPHB3-201ENST00000330394 PABPN1Q86U42 306 aaKnown RBP eCLIP20.02■□□□□ 0.8
EPHB3-201ENST00000330394 FKBP8Q14318 412 aa19.94■□□□□ 0.78
EPHB3-201ENST00000330394 FAM50AQ14320 339 aaKnown RBP19.93■□□□□ 0.78
EPHB3-201ENST00000330394 RTL5Q5HYW3 569 aaPredicted RBP19.91■□□□□ 0.78
EPHB3-201ENST00000330394 CSRNP3Q8WYN3 585 aa19.87■□□□□ 0.77
EPHB3-201ENST00000330394 CDK11AQ9UQ88 783 aaPredicted RBP19.86■□□□□ 0.77
EPHB3-201ENST00000330394 ANP32CO43423 234 aa19.86■□□□□ 0.77
EPHB3-201ENST00000330394 DAXXQ9UER7 740 aaPredicted RBP19.85■□□□□ 0.77
EPHB3-201ENST00000330394 DDX10Q13206 875 aaKnown RBP19.76■□□□□ 0.75
EPHB3-201ENST00000330394 SCRIBQ14160 1630 aa19.76■□□□□ 0.75
EPHB3-201ENST00000330394 TRIM52Q96A61 297 aa19.75■□□□□ 0.75
EPHB3-201ENST00000330394 CCDC180Q9P1Z9 1646 aa19.73■□□□□ 0.75
EPHB3-201ENST00000330394 CLSPNQ9HAW4 1339 aa19.63■□□□□ 0.73
EPHB3-201ENST00000330394 HIRIP3Q9BW71 556 aaPredicted RBP19.62■□□□□ 0.73
EPHB3-201ENST00000330394 IRX6P78412 446 aaPredicted RBP19.61■□□□□ 0.73
EPHB3-201ENST00000330394 ANP32EQ9BTT0 268 aa19.59■□□□□ 0.73
EPHB3-201ENST00000330394 HNRNPUQ00839 825 aaKnown RBP eCLIP19.59■□□□□ 0.73
EPHB3-201ENST00000330394 RSF1Q96T23 1441 aaPredicted RBP19.55■□□□□ 0.72
EPHB3-201ENST00000330394 P3H3Q8IVL6 736 aa19.55■□□□□ 0.72
EPHB3-201ENST00000330394 NBR1Q14596 966 aa19.53■□□□□ 0.72
EPHB3-201ENST00000330394 ZNF326Q5BKZ1 582 aaKnown RBP19.53■□□□□ 0.72
EPHB3-201ENST00000330394 NPM2Q86SE8 214 aaKnown RBP19.52■□□□□ 0.72
EPHB3-201ENST00000330394 SUPT16HQ9Y5B9 1047 aaKnown RBP19.52■□□□□ 0.71
EPHB3-201ENST00000330394 ANP32AP39687 249 aaKnown RBP19.44■□□□□ 0.7
EPHB3-201ENST00000330394 FAM9BQ8IZU0 186 aa19.44■□□□□ 0.7
EPHB3-201ENST00000330394 EIF5BO60841 1220 aaKnown RBP19.39■□□□□ 0.69
EPHB3-201ENST00000330394 BCL11AQ9H165 835 aa19.39■□□□□ 0.69
EPHB3-201ENST00000330394 CEP162Q5TB80 1403 aa19.39■□□□□ 0.69
EPHB3-201ENST00000330394 ARID3CA6NKF2 412 aa19.3■□□□□ 0.68
EPHB3-201ENST00000330394 TONSLQ96HA7 1378 aa19.3■□□□□ 0.68
EPHB3-201ENST00000330394 SENP3-EIF4A1A0A087X0R7 540 aa19.29■□□□□ 0.68
EPHB3-201ENST00000330394 SALL2Q9Y467 1007 aaPredicted RBP19.29■□□□□ 0.68
EPHB3-201ENST00000330394 CLIP1P30622 1438 aa19.26■□□□□ 0.67
EPHB3-201ENST00000330394 CECR2Q9BXF3 1484 aa19.26■□□□□ 0.67
EPHB3-201ENST00000330394 CCDC136Q96JN2 1154 aa19.24■□□□□ 0.67
EPHB3-201ENST00000330394 TSHZ2Q9NRE2 1034 aa19.23■□□□□ 0.67
EPHB3-201ENST00000330394 ZBTB47Q9UFB7 747 aaPredicted RBP19.22■□□□□ 0.67
EPHB3-201ENST00000330394 SLC4A1APQ9BWU0 796 aaKnown RBP19.21■□□□□ 0.67
EPHB3-201ENST00000330394 MRS2Q9HD23 443 aa19.2■□□□□ 0.66
EPHB3-201ENST00000330394 RBM19Q9Y4C8 960 aaKnown RBP19.18■□□□□ 0.66
EPHB3-201ENST00000330394 MYT1LQ9UL68 1186 aa19.16■□□□□ 0.66
EPHB3-201ENST00000330394 SIN3AQ96ST3 1273 aa19.15■□□□□ 0.66
EPHB3-201ENST00000330394 RB1CC1Q8TDY2 1594 aa19.14■□□□□ 0.65
EPHB3-201ENST00000330394 CHIC2Q9UKJ5 165 aa19.13■□□□□ 0.65
EPHB3-201ENST00000330394 TNIKQ9UKE5 1360 aa19.12■□□□□ 0.65
EPHB3-201ENST00000330394 RTN4Q9NQC3 1192 aaKnown RBP19.1■□□□□ 0.65
EPHB3-201ENST00000330394 SOGA1O94964 1423 aa19.06■□□□□ 0.64
EPHB3-201ENST00000330394 B4GALNT3Q6L9W6 998 aa19.05■□□□□ 0.64
EPHB3-201ENST00000330394 KCNH8Q96L42 1107 aa19.05■□□□□ 0.64
EPHB3-201ENST00000330394 ARXQ96QS3 562 aa19.04■□□□□ 0.64
EPHB3-201ENST00000330394 GOLGA3Q08378 1498 aa19.03■□□□□ 0.64
EPHB3-201ENST00000330394 TMC1Q8TDI8 760 aa19.02■□□□□ 0.64
EPHB3-201ENST00000330394 CANXP27824 592 aaKnown RBP18.97■□□□□ 0.63
EPHB3-201ENST00000330394 ZNF777Q9ULD5 760 aaPredicted RBP18.97■□□□□ 0.63
EPHB3-201ENST00000330394 MROH2BQ7Z745 1585 aa18.96■□□□□ 0.63
EPHB3-201ENST00000330394 DEKP35659 375 aaKnown RBP18.95■□□□□ 0.62
EPHB3-201ENST00000330394 EIF4G2P78344 907 aaKnown RBP eCLIP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 136.4 ms