Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC3O15379 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.21■□□□□ 0.03
HDAC3O15379 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
HDAC3O15379 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.21■□□□□ 0.03
HDAC3O15379 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.21■□□□□ 0.03
HDAC3O15379 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.21■□□□□ 0.03
HDAC3O15379 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
HDAC3O15379 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.21■□□□□ 0.03
HDAC3O15379 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
HDAC3O15379 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.21■□□□□ 0.03
HDAC3O15379 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 AZGP1P1-201ENST00000411909 902 ntBASIC15.21■□□□□ 0.03
HDAC3O15379 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.21■□□□□ 0.03
HDAC3O15379 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.21■□□□□ 0.03
HDAC3O15379 FAM86C2P-203ENST00000528684 1004 ntBASIC15.21■□□□□ 0.03
HDAC3O15379 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.21■□□□□ 0.03
HDAC3O15379 AL662844.1-201ENST00000546340 181 ntBASIC15.21■□□□□ 0.03
HDAC3O15379 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.21■□□□□ 0.03
HDAC3O15379 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.21■□□□□ 0.03
HDAC3O15379 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.21■□□□□ 0.03
HDAC3O15379 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.21■□□□□ 0.03
HDAC3O15379 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.21■□□□□ 0.03
HDAC3O15379 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC3O15379 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.21■□□□□ 0.02
HDAC3O15379 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HDAC3O15379 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
HDAC3O15379 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
HDAC3O15379 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.02
HDAC3O15379 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
HDAC3O15379 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.2■□□□□ 0.02
HDAC3O15379 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC3O15379 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HDAC3O15379 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HDAC3O15379 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
HDAC3O15379 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC3O15379 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC3O15379 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.2■□□□□ 0.02
HDAC3O15379 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC3O15379 RN7SL589P-201ENST00000481268 310 ntBASIC15.2■□□□□ 0.02
HDAC3O15379 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC3O15379 AP000842.3-202ENST00000569238 1080 ntBASIC15.2■□□□□ 0.02
HDAC3O15379 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.2■□□□□ 0.02
HDAC3O15379 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HDAC3O15379 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC3O15379 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HDAC3O15379 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC3O15379 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDAC3O15379 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HDAC3O15379 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.2■□□□□ 0.02
HDAC3O15379 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.19■□□□□ 0.02
HDAC3O15379 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HDAC3O15379 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC3O15379 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC3O15379 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC3O15379 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC3O15379 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HDAC3O15379 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC3O15379 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC3O15379 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC3O15379 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC3O15379 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.19■□□□□ 0.02
HDAC3O15379 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC3O15379 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms