Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 CTBP2P5-201ENST00000454986 1264 ntBASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 AP001063.1-201ENST00000568332 529 ntBASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 RPSAP52-203ENST00000622976 1023 ntBASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC18.07■□□□□ 0.48
CTDP1Q9Y5B0 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 AC134312.5-201ENST00000568031 1313 ntBASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 SNX29P1-201ENST00000548357 1007 ntBASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CTDP1Q9Y5B0 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 PDIA3P1-201ENST00000471856 1510 ntBASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 AC005229.1-201ENST00000392885 409 ntBASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 BAATP1-201ENST00000412284 1225 ntBASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 MIR4259-201ENST00000584466 101 ntBASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 AC093813.1-201ENST00000605066 256 ntBASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 MIR6799-201ENST00000620297 69 ntBASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 AP003680.1-201ENST00000598970 3660 ntBASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC18.05■□□□□ 0.48
CTDP1Q9Y5B0 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.04■□□□□ 0.48
CTDP1Q9Y5B0 MTHFR-217ENST00000641820 1569 ntBASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms