Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC12.89□□□□□ -0.35
NKX2-1P43699 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
NKX2-1P43699 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
NKX2-1P43699 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
NKX2-1P43699 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC12.89□□□□□ -0.35
NKX2-1P43699 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.89□□□□□ -0.35
NKX2-1P43699 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.89□□□□□ -0.35
NKX2-1P43699 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
NKX2-1P43699 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC12.89□□□□□ -0.35
NKX2-1P43699 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
NKX2-1P43699 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 AC073439.1-201ENST00000624121 1774 ntBASIC12.89□□□□□ -0.35
NKX2-1P43699 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
NKX2-1P43699 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.89□□□□□ -0.35
NKX2-1P43699 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC12.89□□□□□ -0.35
NKX2-1P43699 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
NKX2-1P43699 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
NKX2-1P43699 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.35
NKX2-1P43699 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 ZBTB45P2-201ENST00000452245 1531 ntBASIC12.88□□□□□ -0.35
NKX2-1P43699 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
NKX2-1P43699 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.88□□□□□ -0.35
NKX2-1P43699 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
NKX2-1P43699 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
NKX2-1P43699 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC12.88□□□□□ -0.35
NKX2-1P43699 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC12.88□□□□□ -0.35
NKX2-1P43699 TSPY19P-201ENST00000418461 509 ntBASIC12.88□□□□□ -0.35
NKX2-1P43699 FAM8A3P-201ENST00000427218 844 ntBASIC12.88□□□□□ -0.35
NKX2-1P43699 TSPY18P-201ENST00000441642 509 ntBASIC12.88□□□□□ -0.35
NKX2-1P43699 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC12.88□□□□□ -0.35
NKX2-1P43699 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC12.88□□□□□ -0.35
NKX2-1P43699 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC12.88□□□□□ -0.35
NKX2-1P43699 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 IRF8-202ENST00000562492 946 ntTSL 3 BASIC12.88□□□□□ -0.35
NKX2-1P43699 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC12.88□□□□□ -0.35
NKX2-1P43699 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 AL078644.1-201ENST00000609881 752 ntBASIC12.88□□□□□ -0.35
NKX2-1P43699 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
NKX2-1P43699 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC12.88□□□□□ -0.35
NKX2-1P43699 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 ABR-228ENST00000574437 3196 ntTSL 5 BASIC12.88□□□□□ -0.35
NKX2-1P43699 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
NKX2-1P43699 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
NKX2-1P43699 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
NKX2-1P43699 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC12.87□□□□□ -0.35
NKX2-1P43699 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.87□□□□□ -0.35
NKX2-1P43699 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms