RNA–Protein interactions for RNA: ENST00000228437.9

PRDM4-201, Transcript of PR/SET domain 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PRDM4, Length 4,210 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM4-201ENST00000228437 NISCHQ9Y2I1 1504 aa25.69■■□□□ 1.7
PRDM4-201ENST00000228437 SUPT5HO00267 1087 aaKnown RBP24.66■■□□□ 1.54
PRDM4-201ENST00000228437 SHROOM4Q9ULL8 1493 aa24.51■■□□□ 1.51
PRDM4-201ENST00000228437 PCGF6Q9BYE7 350 aa24.21■■□□□ 1.47
PRDM4-201ENST00000228437 DCAF8L2P0C7V8 631 aa24.04■■□□□ 1.44
PRDM4-201ENST00000228437 PPARGC1BQ86YN6 1023 aaKnown RBP23.95■■□□□ 1.42
PRDM4-201ENST00000228437 HRCP23327 699 aa23.91■■□□□ 1.42
PRDM4-201ENST00000228437 EHMT2Q96KQ7 1210 aa23.53■■□□□ 1.36
PRDM4-201ENST00000228437 CHIC1Q5VXU3 224 aa23.25■■□□□ 1.31
PRDM4-201ENST00000228437 LOC105371045A0A1W2PR82 267 aa23.25■■□□□ 1.31
PRDM4-201ENST00000228437 PELP1Q8IZL8 1130 aaKnown RBP23.16■■□□□ 1.3
PRDM4-201ENST00000228437 FAM9AQ8IZU1 332 aaPredicted RBP23.1■■□□□ 1.29
PRDM4-201ENST00000228437 TRIM26Q12899 539 aaPredicted RBP22.9■■□□□ 1.26
PRDM4-201ENST00000228437 TTBK1Q5TCY1 1321 aaPredicted RBP22.85■■□□□ 1.25
PRDM4-201ENST00000228437 MYO15BQ96JP2 1530 aa22.78■■□□□ 1.24
PRDM4-201ENST00000228437 ZEB1P37275 1124 aaPredicted RBP22.74■■□□□ 1.23
PRDM4-201ENST00000228437 SCAF1Q9H7N4 1312 aaKnown RBP22.66■■□□□ 1.22
PRDM4-201ENST00000228437 CCER1Q8TC90 406 aaPredicted RBP22.6■■□□□ 1.21
PRDM4-201ENST00000228437 YTHDC1Q96MU7 727 aaKnown RBP22.6■■□□□ 1.21
PRDM4-201ENST00000228437 CENPBP07199 599 aaPredicted RBP22.53■■□□□ 1.2
PRDM4-201ENST00000228437 TRIM41Q8WV44 630 aa22.5■■□□□ 1.19
PRDM4-201ENST00000228437 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.43■■□□□ 1.18
PRDM4-201ENST00000228437 GTF3C3Q9Y5Q9 886 aa22.42■■□□□ 1.18
PRDM4-201ENST00000228437 NEUROD1Q13562 356 aa22.26■■□□□ 1.15
PRDM4-201ENST00000228437 ACIN1Q9UKV3 1341 aaKnown RBP22.25■■□□□ 1.15
PRDM4-201ENST00000228437 MYT1Q01538 1121 aa22.24■■□□□ 1.15
PRDM4-201ENST00000228437 DIEXFQ68CQ4 756 aaKnown RBP22.21■■□□□ 1.15
PRDM4-201ENST00000228437 DCAF1Q9Y4B6 1507 aa22.13■■□□□ 1.13
PRDM4-201ENST00000228437 RANGAP1P46060 587 aaPredicted RBP21.88■■□□□ 1.09
PRDM4-201ENST00000228437 HNRNPUL2Q1KMD3 747 aaKnown RBP21.75■■□□□ 1.07
PRDM4-201ENST00000228437 UBTFP17480 764 aaKnown RBP21.72■■□□□ 1.07
PRDM4-201ENST00000228437 CCDC180Q9P1Z9 1646 aa21.63■■□□□ 1.05
PRDM4-201ENST00000228437 ZCCHC6Q5VYS8 1495 aaKnown RBP21.62■■□□□ 1.05
PRDM4-201ENST00000228437 APLP2Q06481 763 aa21.6■■□□□ 1.05
PRDM4-201ENST00000228437 ZNF316A6NFI3 1004 aaPredicted RBP21.59■■□□□ 1.05
PRDM4-201ENST00000228437 BCANQ96GW7 911 aa21.53■■□□□ 1.04
PRDM4-201ENST00000228437 MIER1Q8N108 512 aa21.5■■□□□ 1.03
PRDM4-201ENST00000228437 ERICH6Q7L0X2 663 aa21.28■■□□□ 1
PRDM4-201ENST00000228437 ITGAEP38570 1179 aa21.27■□□□□ 0.99
PRDM4-201ENST00000228437 NEFLP07196 543 aa21.21■□□□□ 0.99
PRDM4-201ENST00000228437 ABCC9O60706 1549 aa21.08■□□□□ 0.96
PRDM4-201ENST00000228437 FKBP8Q14318 412 aa20.99■□□□□ 0.95
PRDM4-201ENST00000228437 SUPT16HQ9Y5B9 1047 aaKnown RBP20.99■□□□□ 0.95
PRDM4-201ENST00000228437 BCL11AQ9H165 835 aa20.98■□□□□ 0.95
PRDM4-201ENST00000228437 ANP32EQ9BTT0 268 aa20.97■□□□□ 0.95
PRDM4-201ENST00000228437 RSF1Q96T23 1441 aaPredicted RBP20.97■□□□□ 0.95
PRDM4-201ENST00000228437 ATP1B4Q9UN42 357 aaPredicted RBP20.92■□□□□ 0.94
PRDM4-201ENST00000228437 CSRNP3Q8WYN3 585 aa20.87■□□□□ 0.93
PRDM4-201ENST00000228437 TSHZ2Q9NRE2 1034 aa20.82■□□□□ 0.92
PRDM4-201ENST00000228437 SCRIBQ14160 1630 aa20.82■□□□□ 0.92
PRDM4-201ENST00000228437 TRIM52Q96A61 297 aa20.8■□□□□ 0.92
PRDM4-201ENST00000228437 CNGB1Q14028 1251 aaPredicted RBP20.79■□□□□ 0.92
PRDM4-201ENST00000228437 DDX10Q13206 875 aaKnown RBP20.76■□□□□ 0.91
PRDM4-201ENST00000228437 CEP162Q5TB80 1403 aa20.75■□□□□ 0.91
PRDM4-201ENST00000228437 HIRIP3Q9BW71 556 aaPredicted RBP20.75■□□□□ 0.91
PRDM4-201ENST00000228437 RB1CC1Q8TDY2 1594 aa20.74■□□□□ 0.91
PRDM4-201ENST00000228437 PABPN1Q86U42 306 aaKnown RBP eCLIP20.7■□□□□ 0.91
PRDM4-201ENST00000228437 IRX6P78412 446 aaPredicted RBP20.7■□□□□ 0.9
PRDM4-201ENST00000228437 KCNH8Q96L42 1107 aa20.67■□□□□ 0.9
PRDM4-201ENST00000228437 CLSPNQ9HAW4 1339 aa20.6■□□□□ 0.89
PRDM4-201ENST00000228437 CDK11AQ9UQ88 783 aaPredicted RBP20.57■□□□□ 0.88
PRDM4-201ENST00000228437 FAM50AQ14320 339 aaKnown RBP20.54■□□□□ 0.88
PRDM4-201ENST00000228437 ANP32CO43423 234 aa20.54■□□□□ 0.88
PRDM4-201ENST00000228437 RBM19Q9Y4C8 960 aaKnown RBP20.54■□□□□ 0.88
PRDM4-201ENST00000228437 SOGA1O94964 1423 aa20.52■□□□□ 0.88
PRDM4-201ENST00000228437 CECR2Q9BXF3 1484 aa20.51■□□□□ 0.87
PRDM4-201ENST00000228437 NBR1Q14596 966 aa20.5■□□□□ 0.87
PRDM4-201ENST00000228437 POLR3GLQ9BT43 218 aa20.45■□□□□ 0.86
PRDM4-201ENST00000228437 HNRNPUQ00839 825 aaKnown RBP eCLIP20.43■□□□□ 0.86
PRDM4-201ENST00000228437 TNIKQ9UKE5 1360 aa20.42■□□□□ 0.86
PRDM4-201ENST00000228437 CCDC88BA6NC98 1476 aa20.39■□□□□ 0.85
PRDM4-201ENST00000228437 CLIP1P30622 1438 aa20.39■□□□□ 0.85
PRDM4-201ENST00000228437 ABCC8Q09428 1581 aa20.36■□□□□ 0.85
PRDM4-201ENST00000228437 RTL5Q5HYW3 569 aaPredicted RBP20.36■□□□□ 0.85
PRDM4-201ENST00000228437 SIN3AQ96ST3 1273 aa20.33■□□□□ 0.84
PRDM4-201ENST00000228437 SENP3-EIF4A1A0A087X0R7 540 aa20.32■□□□□ 0.84
PRDM4-201ENST00000228437 P3H3Q8IVL6 736 aa20.28■□□□□ 0.84
PRDM4-201ENST00000228437 MROH2BQ7Z745 1585 aa20.26■□□□□ 0.83
PRDM4-201ENST00000228437 RUSC2Q8N2Y8 1516 aa20.26■□□□□ 0.83
PRDM4-201ENST00000228437 GOLGA3Q08378 1498 aa20.23■□□□□ 0.83
PRDM4-201ENST00000228437 FAM9BQ8IZU0 186 aa20.23■□□□□ 0.83
PRDM4-201ENST00000228437 NPM2Q86SE8 214 aaKnown RBP20.22■□□□□ 0.83
PRDM4-201ENST00000228437 KANK4Q5T7N3 995 aaPredicted RBP20.21■□□□□ 0.83
PRDM4-201ENST00000228437 RTN4Q9NQC3 1192 aaKnown RBP20.21■□□□□ 0.83
PRDM4-201ENST00000228437 WRNQ14191 1432 aaPredicted RBP eCLIP20.19■□□□□ 0.82
PRDM4-201ENST00000228437 DEKP35659 375 aaKnown RBP20.16■□□□□ 0.82
PRDM4-201ENST00000228437 B4GALNT3Q6L9W6 998 aa20.14■□□□□ 0.81
PRDM4-201ENST00000228437 DHX57Q6P158 1386 aaKnown RBP20.11■□□□□ 0.81
PRDM4-201ENST00000228437 WIZO95785 1651 aa20.1■□□□□ 0.81
PRDM4-201ENST00000228437 EIF5BO60841 1220 aaKnown RBP20.06■□□□□ 0.8
PRDM4-201ENST00000228437 ANP32AP39687 249 aaKnown RBP20.06■□□□□ 0.8
PRDM4-201ENST00000228437 TONSLQ96HA7 1378 aa20.02■□□□□ 0.8
PRDM4-201ENST00000228437 MSH5O43196 834 aa20.01■□□□□ 0.79
PRDM4-201ENST00000228437 VPS8Q8N3P4 1428 aa20.01■□□□□ 0.79
PRDM4-201ENST00000228437 EEA1Q15075 1411 aa20.01■□□□□ 0.79
PRDM4-201ENST00000228437 ZNF326Q5BKZ1 582 aaKnown RBP19.98■□□□□ 0.79
PRDM4-201ENST00000228437 SALL2Q9Y467 1007 aaPredicted RBP19.97■□□□□ 0.79
PRDM4-201ENST00000228437 CEP164Q9UPV0 1460 aa19.97■□□□□ 0.79
PRDM4-201ENST00000228437 MRS2Q9HD23 443 aa19.97■□□□□ 0.79
PRDM4-201ENST00000228437 ZBTB47Q9UFB7 747 aaPredicted RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms