RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 DCAF8L2P0C7V8 631 aa23.25■■□□□ 1.31
COL4A3-202ENST00000396578 PELP1Q8IZL8 1130 aaKnown RBP22.79■■□□□ 1.24
COL4A3-202ENST00000396578 SUPT5HO00267 1087 aaKnown RBP22.26■■□□□ 1.15
COL4A3-202ENST00000396578 ERICH6Q7L0X2 663 aa21.84■■□□□ 1.09
COL4A3-202ENST00000396578 EHMT2Q96KQ7 1210 aa21.83■■□□□ 1.09
COL4A3-202ENST00000396578 APLP2Q06481 763 aa21.74■■□□□ 1.07
COL4A3-202ENST00000396578 CCER1Q8TC90 406 aaPredicted RBP21.72■■□□□ 1.07
COL4A3-202ENST00000396578 SHROOM4Q9ULL8 1493 aa21.64■■□□□ 1.05
COL4A3-202ENST00000396578 CENPBP07199 599 aaPredicted RBP21.57■■□□□ 1.04
COL4A3-202ENST00000396578 MYT1Q01538 1121 aa21.54■■□□□ 1.04
COL4A3-202ENST00000396578 FAM9AQ8IZU1 332 aaPredicted RBP21.33■■□□□ 1
COL4A3-202ENST00000396578 PCGF6Q9BYE7 350 aa21.32■■□□□ 1
COL4A3-202ENST00000396578 ZEB1P37275 1124 aaPredicted RBP21.27■■□□□ 1
COL4A3-202ENST00000396578 NISCHQ9Y2I1 1504 aa21.24■□□□□ 0.99
COL4A3-202ENST00000396578 TTBK1Q5TCY1 1321 aaPredicted RBP21.21■□□□□ 0.99
COL4A3-202ENST00000396578 NEFLP07196 543 aa21.16■□□□□ 0.98
COL4A3-202ENST00000396578 YTHDC1Q96MU7 727 aaKnown RBP20.88■□□□□ 0.93
COL4A3-202ENST00000396578 RANGAP1P46060 587 aaPredicted RBP20.79■□□□□ 0.92
COL4A3-202ENST00000396578 DAXXQ9UER7 740 aaPredicted RBP20.78■□□□□ 0.92
COL4A3-202ENST00000396578 ATP1B4Q9UN42 357 aaPredicted RBP20.76■□□□□ 0.91
COL4A3-202ENST00000396578 TRIM41Q8WV44 630 aa20.63■□□□□ 0.89
COL4A3-202ENST00000396578 UBTFP17480 764 aaKnown RBP20.55■□□□□ 0.88
COL4A3-202ENST00000396578 RTL5Q5HYW3 569 aaPredicted RBP20.3■□□□□ 0.84
COL4A3-202ENST00000396578 TRIM26Q12899 539 aaPredicted RBP20.3■□□□□ 0.84
COL4A3-202ENST00000396578 ZNF316A6NFI3 1004 aaPredicted RBP20.26■□□□□ 0.83
COL4A3-202ENST00000396578 POLR3GLQ9BT43 218 aa20.21■□□□□ 0.83
COL4A3-202ENST00000396578 PPARGC1BQ86YN6 1023 aaKnown RBP20.2■□□□□ 0.82
COL4A3-202ENST00000396578 HRCP23327 699 aa20.2■□□□□ 0.82
COL4A3-202ENST00000396578 CLSPNQ9HAW4 1339 aa20.08■□□□□ 0.8
COL4A3-202ENST00000396578 ITGAEP38570 1179 aa20.01■□□□□ 0.79
COL4A3-202ENST00000396578 MYT1LQ9UL68 1186 aa20■□□□□ 0.79
COL4A3-202ENST00000396578 CNGB1Q14028 1251 aaPredicted RBP19.96■□□□□ 0.79
COL4A3-202ENST00000396578 SLC4A1APQ9BWU0 796 aaKnown RBP19.89■□□□□ 0.77
COL4A3-202ENST00000396578 DIEXFQ68CQ4 756 aaKnown RBP19.87■□□□□ 0.77
COL4A3-202ENST00000396578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.86■□□□□ 0.77
COL4A3-202ENST00000396578 HNRNPUL2Q1KMD3 747 aaKnown RBP19.86■□□□□ 0.77
COL4A3-202ENST00000396578 CDK11AQ9UQ88 783 aaPredicted RBP19.71■□□□□ 0.75
COL4A3-202ENST00000396578 CHIC1Q5VXU3 224 aa19.69■□□□□ 0.74
COL4A3-202ENST00000396578 ZBTB47Q9UFB7 747 aaPredicted RBP19.64■□□□□ 0.73
COL4A3-202ENST00000396578 LOC105371045A0A1W2PR82 267 aa19.59■□□□□ 0.73
COL4A3-202ENST00000396578 BCANQ96GW7 911 aa19.59■□□□□ 0.73
COL4A3-202ENST00000396578 GTF3C3Q9Y5Q9 886 aa19.59■□□□□ 0.73
COL4A3-202ENST00000396578 ANP32CO43423 234 aa19.51■□□□□ 0.71
COL4A3-202ENST00000396578 ANP32AP39687 249 aaKnown RBP19.46■□□□□ 0.71
COL4A3-202ENST00000396578 FAM50AQ14320 339 aaKnown RBP19.46■□□□□ 0.71
COL4A3-202ENST00000396578 CANXP27824 592 aaKnown RBP19.43■□□□□ 0.7
COL4A3-202ENST00000396578 TRIM52Q96A61 297 aa19.41■□□□□ 0.7
COL4A3-202ENST00000396578 NEUROD1Q13562 356 aa19.4■□□□□ 0.7
COL4A3-202ENST00000396578 ANP32BQ92688 251 aaKnown RBP19.38■□□□□ 0.69
COL4A3-202ENST00000396578 EIF5BO60841 1220 aaKnown RBP19.37■□□□□ 0.69
COL4A3-202ENST00000396578 GLIPR1L2Q4G1C9 344 aa19.37■□□□□ 0.69
COL4A3-202ENST00000396578 BCL11AQ9H165 835 aa19.31■□□□□ 0.68
COL4A3-202ENST00000396578 SLC24A1O60721 1099 aa19.29■□□□□ 0.68
COL4A3-202ENST00000396578 NEFMP07197 916 aa19.25■□□□□ 0.67
COL4A3-202ENST00000396578 ZNF326Q5BKZ1 582 aaKnown RBP19.25■□□□□ 0.67
COL4A3-202ENST00000396578 NPM2Q86SE8 214 aaKnown RBP19.22■□□□□ 0.67
COL4A3-202ENST00000396578 HSP90AA1P07900 732 aaKnown RBP19.18■□□□□ 0.66
COL4A3-202ENST00000396578 ACIN1Q9UKV3 1341 aaKnown RBP19.17■□□□□ 0.66
COL4A3-202ENST00000396578 UPF2Q9HAU5 1272 aaKnown RBP19.11■□□□□ 0.65
COL4A3-202ENST00000396578 FKBP8Q14318 412 aa18.98■□□□□ 0.63
COL4A3-202ENST00000396578 NBR1Q14596 966 aa18.93■□□□□ 0.62
COL4A3-202ENST00000396578 ARXQ96QS3 562 aa18.84■□□□□ 0.61
COL4A3-202ENST00000396578 HNRNPUQ00839 825 aaKnown RBP eCLIP18.82■□□□□ 0.6
COL4A3-202ENST00000396578 CCDC136Q96JN2 1154 aa18.79■□□□□ 0.6
COL4A3-202ENST00000396578 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.79■□□□□ 0.6
COL4A3-202ENST00000396578 TONSLQ96HA7 1378 aa18.74■□□□□ 0.59
COL4A3-202ENST00000396578 CDK11BP21127 795 aaKnown RBP18.74■□□□□ 0.59
COL4A3-202ENST00000396578 FAM9BQ8IZU0 186 aa18.73■□□□□ 0.59
COL4A3-202ENST00000396578 TNNT2P45379 298 aaPredicted RBP18.7■□□□□ 0.58
COL4A3-202ENST00000396578 TRIM44Q96DX7 344 aaPredicted RBP18.69■□□□□ 0.58
COL4A3-202ENST00000396578 FBLN2P98095 1184 aa18.67■□□□□ 0.58
COL4A3-202ENST00000396578 TMC1Q8TDI8 760 aa18.65■□□□□ 0.58
COL4A3-202ENST00000396578 SALL2Q9Y467 1007 aaPredicted RBP18.64■□□□□ 0.57
COL4A3-202ENST00000396578 ANP32EQ9BTT0 268 aa18.63■□□□□ 0.57
COL4A3-202ENST00000396578 DDRGK1Q96HY6 314 aa18.62■□□□□ 0.57
COL4A3-202ENST00000396578 BECN1Q14457 450 aa18.62■□□□□ 0.57
COL4A3-202ENST00000396578 ZNF777Q9ULD5 760 aaPredicted RBP18.61■□□□□ 0.57
COL4A3-202ENST00000396578 DDX10Q13206 875 aaKnown RBP18.61■□□□□ 0.57
COL4A3-202ENST00000396578 MYH16Q9H6N6 1097 aa18.61■□□□□ 0.57
COL4A3-202ENST00000396578 WDR43Q15061 677 aaKnown RBP eCLIP18.59■□□□□ 0.57
COL4A3-202ENST00000396578 NCLP19338 710 aaKnown RBP18.58■□□□□ 0.57
COL4A3-202ENST00000396578 P3H3Q8IVL6 736 aa18.57■□□□□ 0.56
COL4A3-202ENST00000396578 ARID3CA6NKF2 412 aa18.55■□□□□ 0.56
COL4A3-202ENST00000396578 ESF1Q9H501 851 aaKnown RBP18.55■□□□□ 0.56
COL4A3-202ENST00000396578 GOLGA6L22H0YM25 854 aa18.55■□□□□ 0.56
COL4A3-202ENST00000396578 STAG3Q9UJ98 1225 aa18.54■□□□□ 0.56
COL4A3-202ENST00000396578 CHGAP10645 457 aaKnown RBP18.5■□□□□ 0.55
COL4A3-202ENST00000396578 MRS2Q9HD23 443 aa18.47■□□□□ 0.55
COL4A3-202ENST00000396578 PTMAP06454 111 aaKnown RBP18.46■□□□□ 0.55
COL4A3-202ENST00000396578 DNTTIP2Q5QJE6 756 aaKnown RBP18.46■□□□□ 0.55
COL4A3-202ENST00000396578 DCAF1Q9Y4B6 1507 aa18.44■□□□□ 0.54
COL4A3-202ENST00000396578 IRX6P78412 446 aaPredicted RBP18.44■□□□□ 0.54
COL4A3-202ENST00000396578 ZRSR1Q15695 479 aaKnown RBP18.44■□□□□ 0.54
COL4A3-202ENST00000396578 SCAF1Q9H7N4 1312 aaKnown RBP18.42■□□□□ 0.54
COL4A3-202ENST00000396578 CSRNP3Q8WYN3 585 aa18.42■□□□□ 0.54
COL4A3-202ENST00000396578 ERICH6BQ5W0A0 696 aa18.42■□□□□ 0.54
COL4A3-202ENST00000396578 PABPN1Q86U42 306 aaKnown RBP eCLIP18.41■□□□□ 0.54
COL4A3-202ENST00000396578 NAP1L5Q96NT1 182 aaPredicted RBP18.37■□□□□ 0.53
COL4A3-202ENST00000396578 CASC1Q6TDU7 716 aa18.36■□□□□ 0.53
COL4A3-202ENST00000396578 PPM1GO15355 546 aaPredicted RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms