Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.07■□□□□ 0
PIF1Q9H611 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.07■□□□□ 0
PIF1Q9H611 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.07■□□□□ 0
PIF1Q9H611 MIR4313-201ENST00000580760 101 ntBASIC15.07■□□□□ 0
PIF1Q9H611 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.07■□□□□ 0
PIF1Q9H611 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
PIF1Q9H611 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PIF1Q9H611 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.07■□□□□ 0
PIF1Q9H611 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.07■□□□□ 0
PIF1Q9H611 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
PIF1Q9H611 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
PIF1Q9H611 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
PIF1Q9H611 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.07■□□□□ 0
PIF1Q9H611 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.07■□□□□ 0
PIF1Q9H611 C8orf49-201ENST00000525043 1968 ntBASIC15.07■□□□□ 0
PIF1Q9H611 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.07■□□□□ 0
PIF1Q9H611 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.07■□□□□ 0
PIF1Q9H611 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PIF1Q9H611 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
PIF1Q9H611 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
PIF1Q9H611 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.07■□□□□ 0
PIF1Q9H611 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.07■□□□□ 0
PIF1Q9H611 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.06■□□□□ 0
PIF1Q9H611 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
PIF1Q9H611 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.06■□□□□ 0
PIF1Q9H611 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.06■□□□□ 0
PIF1Q9H611 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.06■□□□□ 0
PIF1Q9H611 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.06■□□□□ 0
PIF1Q9H611 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.06■□□□□ 0
PIF1Q9H611 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.06■□□□□ 0
PIF1Q9H611 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.06■□□□□ 0
PIF1Q9H611 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.06■□□□□ 0
PIF1Q9H611 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.06■□□□□ 0
PIF1Q9H611 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.06■□□□□ 0
PIF1Q9H611 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.06■□□□□ 0
PIF1Q9H611 AC096734.2-201ENST00000562054 433 ntBASIC15.06■□□□□ 0
PIF1Q9H611 AC034105.1-201ENST00000563488 319 ntBASIC15.06■□□□□ 0
PIF1Q9H611 AC106730.1-201ENST00000566722 1090 ntBASIC15.06■□□□□ 0
PIF1Q9H611 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
PIF1Q9H611 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.06■□□□□ 0
PIF1Q9H611 AC023141.13-201ENST00000604991 943 ntBASIC15.06■□□□□ 0
PIF1Q9H611 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.06■□□□□ 0
PIF1Q9H611 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
PIF1Q9H611 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.06■□□□□ 0
PIF1Q9H611 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.06■□□□□ 0
PIF1Q9H611 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 BNIP3P1-202ENST00000550043 1585 ntBASIC15.06■□□□□ 0
PIF1Q9H611 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.06■□□□□ 0
PIF1Q9H611 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.06■□□□□ 0
PIF1Q9H611 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.05■□□□□ 0
PIF1Q9H611 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.05■□□□□ 0
PIF1Q9H611 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PIF1Q9H611 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PIF1Q9H611 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PIF1Q9H611 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.05■□□□□ -0
PIF1Q9H611 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PIF1Q9H611 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PIF1Q9H611 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PIF1Q9H611 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PIF1Q9H611 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
PIF1Q9H611 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.05■□□□□ -0
PIF1Q9H611 RHOQP3-201ENST00000437982 621 ntBASIC15.05■□□□□ -0
PIF1Q9H611 AC140658.5-201ENST00000438532 169 ntBASIC15.05■□□□□ -0
PIF1Q9H611 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.05■□□□□ -0
PIF1Q9H611 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.05■□□□□ -0
PIF1Q9H611 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PIF1Q9H611 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.05■□□□□ -0
PIF1Q9H611 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.05■□□□□ -0
PIF1Q9H611 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.05■□□□□ -0
PIF1Q9H611 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.05■□□□□ -0
PIF1Q9H611 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PIF1Q9H611 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.05■□□□□ -0
PIF1Q9H611 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.05■□□□□ -0
PIF1Q9H611 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
PIF1Q9H611 WASH6P-202ENST00000359512 1437 ntBASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms