RNA–Protein interactions for RNA: ENST00000306149.11

CSDC2-201, Transcript of cold shock domain containing C2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSDC2, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDC2-201ENST00000306149 NISCHQ9Y2I1 1504 aa31.2■■■□□ 2.58
CSDC2-201ENST00000306149 SHROOM4Q9ULL8 1493 aa26.9■■□□□ 1.9
CSDC2-201ENST00000306149 SUPT5HO00267 1087 aaKnown RBP26.39■■□□□ 1.82
CSDC2-201ENST00000306149 CCDC180Q9P1Z9 1646 aa26.37■■□□□ 1.81
CSDC2-201ENST00000306149 ZCCHC6Q5VYS8 1495 aaKnown RBP26.36■■□□□ 1.81
CSDC2-201ENST00000306149 DCAF8L2P0C7V8 631 aa26.19■■□□□ 1.78
CSDC2-201ENST00000306149 CHIC1Q5VXU3 224 aa25.56■■□□□ 1.68
CSDC2-201ENST00000306149 MYO15BQ96JP2 1530 aa25.47■■□□□ 1.67
CSDC2-201ENST00000306149 DCAF1Q9Y4B6 1507 aa25.45■■□□□ 1.67
CSDC2-201ENST00000306149 SCRIBQ14160 1630 aa24.94■■□□□ 1.58
CSDC2-201ENST00000306149 LOC105371045A0A1W2PR82 267 aa24.93■■□□□ 1.58
CSDC2-201ENST00000306149 PCGF6Q9BYE7 350 aa24.88■■□□□ 1.57
CSDC2-201ENST00000306149 ABCC9O60706 1549 aa24.86■■□□□ 1.57
CSDC2-201ENST00000306149 HRCP23327 699 aa24.79■■□□□ 1.56
CSDC2-201ENST00000306149 RSF1Q96T23 1441 aaPredicted RBP24.76■■□□□ 1.55
CSDC2-201ENST00000306149 RB1CC1Q8TDY2 1594 aa24.51■■□□□ 1.51
CSDC2-201ENST00000306149 TRIM41Q8WV44 630 aa24.49■■□□□ 1.51
CSDC2-201ENST00000306149 CECR2Q9BXF3 1484 aa24.45■■□□□ 1.5
CSDC2-201ENST00000306149 PPARGC1BQ86YN6 1023 aaKnown RBP24.44■■□□□ 1.5
CSDC2-201ENST00000306149 FAM9AQ8IZU1 332 aaPredicted RBP24.43■■□□□ 1.5
CSDC2-201ENST00000306149 NACADO15069 1562 aa24.43■■□□□ 1.5
CSDC2-201ENST00000306149 EHMT2Q96KQ7 1210 aa24.33■■□□□ 1.49
CSDC2-201ENST00000306149 MROH2BQ7Z745 1585 aa24.32■■□□□ 1.48
CSDC2-201ENST00000306149 TRIM26Q12899 539 aaPredicted RBP24.28■■□□□ 1.48
CSDC2-201ENST00000306149 WIZO95785 1651 aa24.19■■□□□ 1.46
CSDC2-201ENST00000306149 BAZ1AQ9NRL2 1556 aaPredicted RBP23.93■■□□□ 1.42
CSDC2-201ENST00000306149 EIF4G1Q04637 1599 aaKnown RBP23.78■■□□□ 1.4
CSDC2-201ENST00000306149 ZEB1P37275 1124 aaPredicted RBP23.75■■□□□ 1.39
CSDC2-201ENST00000306149 SMARCA4P51532 1647 aa23.74■■□□□ 1.39
CSDC2-201ENST00000306149 UNC13AQ9UPW8 1703 aa23.74■■□□□ 1.39
CSDC2-201ENST00000306149 PABPN1Q86U42 306 aaKnown RBP eCLIP23.72■■□□□ 1.39
CSDC2-201ENST00000306149 ABCC8Q09428 1581 aa23.72■■□□□ 1.39
CSDC2-201ENST00000306149 CCDC88BA6NC98 1476 aa23.72■■□□□ 1.39
CSDC2-201ENST00000306149 TOP2AP11388 1531 aaKnown RBP23.71■■□□□ 1.39
CSDC2-201ENST00000306149 SMARCA2P51531 1590 aa23.63■■□□□ 1.37
CSDC2-201ENST00000306149 TTBK1Q5TCY1 1321 aaPredicted RBP23.52■■□□□ 1.36
CSDC2-201ENST00000306149 SOGA1O94964 1423 aa23.51■■□□□ 1.35
CSDC2-201ENST00000306149 BICRAQ9NZM4 1560 aa23.45■■□□□ 1.35
CSDC2-201ENST00000306149 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.45■■□□□ 1.34
CSDC2-201ENST00000306149 RUSC2Q8N2Y8 1516 aa23.42■■□□□ 1.34
CSDC2-201ENST00000306149 CSRNP3Q8WYN3 585 aa23.37■■□□□ 1.33
CSDC2-201ENST00000306149 CEP162Q5TB80 1403 aa23.37■■□□□ 1.33
CSDC2-201ENST00000306149 UBTFP17480 764 aaKnown RBP23.36■■□□□ 1.33
CSDC2-201ENST00000306149 CCER1Q8TC90 406 aaPredicted RBP23.33■■□□□ 1.32
CSDC2-201ENST00000306149 TNIKQ9UKE5 1360 aa23.28■■□□□ 1.32
CSDC2-201ENST00000306149 WRNQ14191 1432 aaPredicted RBP eCLIP23.27■■□□□ 1.32
CSDC2-201ENST00000306149 EEA1Q15075 1411 aa23.21■■□□□ 1.31
CSDC2-201ENST00000306149 PEG3Q9GZU2 1588 aa23.19■■□□□ 1.3
CSDC2-201ENST00000306149 ATAD2BQ9ULI0 1458 aa23.17■■□□□ 1.3
CSDC2-201ENST00000306149 SYNJ1O43426 1573 aa23.13■■□□□ 1.29
CSDC2-201ENST00000306149 GOLGA3Q08378 1498 aa23.13■■□□□ 1.29
CSDC2-201ENST00000306149 BAZ1BQ9UIG0 1483 aaKnown RBP23.11■■□□□ 1.29
CSDC2-201ENST00000306149 RANGAP1P46060 587 aaPredicted RBP23.04■■□□□ 1.28
CSDC2-201ENST00000306149 CEP164Q9UPV0 1460 aa22.99■■□□□ 1.27
CSDC2-201ENST00000306149 CLIP1P30622 1438 aa22.93■■□□□ 1.26
CSDC2-201ENST00000306149 KIF21BO75037 1637 aa22.92■■□□□ 1.26
CSDC2-201ENST00000306149 SCAF1Q9H7N4 1312 aaKnown RBP22.91■■□□□ 1.26
CSDC2-201ENST00000306149 RAPGEF2Q9Y4G8 1499 aa22.91■■□□□ 1.26
CSDC2-201ENST00000306149 HNRNPUL2Q1KMD3 747 aaKnown RBP22.9■■□□□ 1.26
CSDC2-201ENST00000306149 DIEXFQ68CQ4 756 aaKnown RBP22.85■■□□□ 1.25
CSDC2-201ENST00000306149 APLP2Q06481 763 aa22.79■■□□□ 1.24
CSDC2-201ENST00000306149 VPS8Q8N3P4 1428 aa22.79■■□□□ 1.24
CSDC2-201ENST00000306149 TOP2BQ02880 1626 aa22.78■■□□□ 1.24
CSDC2-201ENST00000306149 PELP1Q8IZL8 1130 aaKnown RBP22.77■■□□□ 1.24
CSDC2-201ENST00000306149 NEUROD1Q13562 356 aa22.68■■□□□ 1.22
CSDC2-201ENST00000306149 ACIN1Q9UKV3 1341 aaKnown RBP22.66■■□□□ 1.22
CSDC2-201ENST00000306149 NCAPD3P42695 1498 aa22.66■■□□□ 1.22
CSDC2-201ENST00000306149 BIVM-ERCC5R4GMW8 1640 aa22.65■■□□□ 1.22
CSDC2-201ENST00000306149 ZNF316A6NFI3 1004 aaPredicted RBP22.64■■□□□ 1.22
CSDC2-201ENST00000306149 CUX1P39880 1505 aa22.62■■□□□ 1.21
CSDC2-201ENST00000306149 HMGXB3Q12766 1538 aa22.6■■□□□ 1.21
CSDC2-201ENST00000306149 PRXQ9BXM0 1461 aa22.59■■□□□ 1.21
CSDC2-201ENST00000306149 KANK4Q5T7N3 995 aaPredicted RBP22.55■■□□□ 1.2
CSDC2-201ENST00000306149 ARAP1Q96P48 1450 aa22.53■■□□□ 1.2
CSDC2-201ENST00000306149 CENPBP07199 599 aaPredicted RBP22.52■■□□□ 1.2
CSDC2-201ENST00000306149 ERICH3Q5RHP9 1530 aa22.52■■□□□ 1.2
CSDC2-201ENST00000306149 KIF27Q86VH2 1401 aa22.51■■□□□ 1.19
CSDC2-201ENST00000306149 CFTRP13569 1480 aa22.51■■□□□ 1.19
CSDC2-201ENST00000306149 GTF3C3Q9Y5Q9 886 aa22.44■■□□□ 1.18
CSDC2-201ENST00000306149 YTHDC1Q96MU7 727 aaKnown RBP22.44■■□□□ 1.18
CSDC2-201ENST00000306149 MIER1Q8N108 512 aa22.4■■□□□ 1.18
CSDC2-201ENST00000306149 CUX2O14529 1486 aa22.34■■□□□ 1.17
CSDC2-201ENST00000306149 ARHGAP35Q9NRY4 1499 aa22.34■■□□□ 1.17
CSDC2-201ENST00000306149 ITGAEP38570 1179 aa22.33■■□□□ 1.17
CSDC2-201ENST00000306149 IGF1RP08069 1367 aa22.32■■□□□ 1.16
CSDC2-201ENST00000306149 DHX57Q6P158 1386 aaKnown RBP22.32■■□□□ 1.16
CSDC2-201ENST00000306149 CADPSQ9ULU8 1353 aa22.29■■□□□ 1.16
CSDC2-201ENST00000306149 PRDM2Q13029 1718 aa22.29■■□□□ 1.16
CSDC2-201ENST00000306149 CLSPNQ9HAW4 1339 aa22.23■■□□□ 1.15
CSDC2-201ENST00000306149 RRBP1Q9P2E9 1410 aaKnown RBP22.23■■□□□ 1.15
CSDC2-201ENST00000306149 FGD5Q6ZNL6 1462 aa22.23■■□□□ 1.15
CSDC2-201ENST00000306149 CARMIL1Q5VZK9 1371 aa22.22■■□□□ 1.15
CSDC2-201ENST00000306149 CCNB3Q8WWL7 1395 aa22.21■■□□□ 1.15
CSDC2-201ENST00000306149 P3H3Q8IVL6 736 aa22.2■■□□□ 1.14
CSDC2-201ENST00000306149 ATP1B4Q9UN42 357 aaPredicted RBP22.14■■□□□ 1.14
CSDC2-201ENST00000306149 CC2D2AQ9P2K1 1620 aa22.13■■□□□ 1.13
CSDC2-201ENST00000306149 FANCD2Q9BXW9 1451 aa22.09■■□□□ 1.13
CSDC2-201ENST00000306149 RAD54L2Q9Y4B4 1467 aa22.07■■□□□ 1.12
CSDC2-201ENST00000306149 TIAM1Q13009 1591 aa22.05■■□□□ 1.12
CSDC2-201ENST00000306149 RAB3GAP2Q9H2M9 1393 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 206.9 ms