RNA–Protein interactions for RNA: ENST00000340058.5

RET-201, Transcript of ret proto-oncogene, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RET, Length 4,149 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RET-201ENST00000340058 NISCHQ9Y2I1 1504 aa26.65■■□□□ 1.86
RET-201ENST00000340058 DCAF8L2P0C7V8 631 aa26.6■■□□□ 1.85
RET-201ENST00000340058 SUPT5HO00267 1087 aaKnown RBP25.48■■□□□ 1.67
RET-201ENST00000340058 SHROOM4Q9ULL8 1493 aa25.43■■□□□ 1.66
RET-201ENST00000340058 EHMT2Q96KQ7 1210 aa24.56■■□□□ 1.52
RET-201ENST00000340058 FAM9AQ8IZU1 332 aaPredicted RBP23.99■■□□□ 1.43
RET-201ENST00000340058 TTBK1Q5TCY1 1321 aaPredicted RBP23.61■■□□□ 1.37
RET-201ENST00000340058 PCGF6Q9BYE7 350 aa23.56■■□□□ 1.36
RET-201ENST00000340058 TRIM41Q8WV44 630 aa23.37■■□□□ 1.33
RET-201ENST00000340058 RANGAP1P46060 587 aaPredicted RBP23.35■■□□□ 1.33
RET-201ENST00000340058 PPARGC1BQ86YN6 1023 aaKnown RBP23.14■■□□□ 1.29
RET-201ENST00000340058 LOC105371045A0A1W2PR82 267 aa23.09■■□□□ 1.29
RET-201ENST00000340058 CHIC1Q5VXU3 224 aa23.04■■□□□ 1.28
RET-201ENST00000340058 APLP2Q06481 763 aa23.03■■□□□ 1.28
RET-201ENST00000340058 UBTFP17480 764 aaKnown RBP22.92■■□□□ 1.26
RET-201ENST00000340058 ABCC9O60706 1549 aa22.85■■□□□ 1.25
RET-201ENST00000340058 ATP1B4Q9UN42 357 aaPredicted RBP22.73■■□□□ 1.23
RET-201ENST00000340058 PABPN1Q86U42 306 aaKnown RBP eCLIP22.72■■□□□ 1.23
RET-201ENST00000340058 CCER1Q8TC90 406 aaPredicted RBP22.68■■□□□ 1.22
RET-201ENST00000340058 TRIM26Q12899 539 aaPredicted RBP22.41■■□□□ 1.18
RET-201ENST00000340058 HRCP23327 699 aa22.31■■□□□ 1.16
RET-201ENST00000340058 ITGAEP38570 1179 aa22.27■■□□□ 1.16
RET-201ENST00000340058 ZEB1P37275 1124 aaPredicted RBP22.25■■□□□ 1.15
RET-201ENST00000340058 HNRNPUL2Q1KMD3 747 aaKnown RBP22.22■■□□□ 1.15
RET-201ENST00000340058 YTHDC1Q96MU7 727 aaKnown RBP22.14■■□□□ 1.13
RET-201ENST00000340058 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.12■■□□□ 1.13
RET-201ENST00000340058 ZCCHC6Q5VYS8 1495 aaKnown RBP22.11■■□□□ 1.13
RET-201ENST00000340058 SCRIBQ14160 1630 aa21.94■■□□□ 1.1
RET-201ENST00000340058 CENPBP07199 599 aaPredicted RBP21.88■■□□□ 1.09
RET-201ENST00000340058 PELP1Q8IZL8 1130 aaKnown RBP21.68■■□□□ 1.06
RET-201ENST00000340058 CNGB1Q14028 1251 aaPredicted RBP21.68■■□□□ 1.06
RET-201ENST00000340058 CSRNP3Q8WYN3 585 aa21.66■■□□□ 1.06
RET-201ENST00000340058 P3H3Q8IVL6 736 aa21.64■■□□□ 1.05
RET-201ENST00000340058 FAM50AQ14320 339 aaKnown RBP21.61■■□□□ 1.05
RET-201ENST00000340058 MYO15BQ96JP2 1530 aa21.59■■□□□ 1.05
RET-201ENST00000340058 CCDC180Q9P1Z9 1646 aa21.57■■□□□ 1.04
RET-201ENST00000340058 POLR3GLQ9BT43 218 aa21.57■■□□□ 1.04
RET-201ENST00000340058 ARID3CA6NKF2 412 aa21.54■■□□□ 1.04
RET-201ENST00000340058 DIEXFQ68CQ4 756 aaKnown RBP21.48■■□□□ 1.03
RET-201ENST00000340058 RSF1Q96T23 1441 aaPredicted RBP21.46■■□□□ 1.03
RET-201ENST00000340058 MYT1LQ9UL68 1186 aa21.45■■□□□ 1.02
RET-201ENST00000340058 FBLN2P98095 1184 aa21.44■■□□□ 1.02
RET-201ENST00000340058 NEUROD1Q13562 356 aa21.44■■□□□ 1.02
RET-201ENST00000340058 TRIM52Q96A61 297 aa21.28■■□□□ 1
RET-201ENST00000340058 CECR2Q9BXF3 1484 aa21.28■■□□□ 1
RET-201ENST00000340058 NEFLP07196 543 aa21.27■□□□□ 0.99
RET-201ENST00000340058 ZNF326Q5BKZ1 582 aaKnown RBP21.12■□□□□ 0.97
RET-201ENST00000340058 DCAF1Q9Y4B6 1507 aa21.11■□□□□ 0.97
RET-201ENST00000340058 ZNF316A6NFI3 1004 aaPredicted RBP21.05■□□□□ 0.96
RET-201ENST00000340058 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
RET-201ENST00000340058 ZNF777Q9ULD5 760 aaPredicted RBP21.01■□□□□ 0.95
RET-201ENST00000340058 ERICH6Q7L0X2 663 aa21■□□□□ 0.95
RET-201ENST00000340058 GTF3C3Q9Y5Q9 886 aa20.99■□□□□ 0.95
RET-201ENST00000340058 NACADO15069 1562 aa20.95■□□□□ 0.94
RET-201ENST00000340058 BCANQ96GW7 911 aa20.94■□□□□ 0.94
RET-201ENST00000340058 CHIC2Q9UKJ5 165 aa20.9■□□□□ 0.94
RET-201ENST00000340058 SLC4A1APQ9BWU0 796 aaKnown RBP20.9■□□□□ 0.94
RET-201ENST00000340058 MROH2BQ7Z745 1585 aa20.88■□□□□ 0.93
RET-201ENST00000340058 CLIP1P30622 1438 aa20.87■□□□□ 0.93
RET-201ENST00000340058 WRNQ14191 1432 aaPredicted RBP eCLIP20.86■□□□□ 0.93
RET-201ENST00000340058 CEP162Q5TB80 1403 aa20.85■□□□□ 0.93
RET-201ENST00000340058 HIRIP3Q9BW71 556 aaPredicted RBP20.82■□□□□ 0.92
RET-201ENST00000340058 SOGA1O94964 1423 aa20.82■□□□□ 0.92
RET-201ENST00000340058 BAZ1BQ9UIG0 1483 aaKnown RBP20.79■□□□□ 0.92
RET-201ENST00000340058 ANP32CO43423 234 aa20.73■□□□□ 0.91
RET-201ENST00000340058 DDX10Q13206 875 aaKnown RBP20.72■□□□□ 0.91
RET-201ENST00000340058 ACIN1Q9UKV3 1341 aaKnown RBP20.71■□□□□ 0.91
RET-201ENST00000340058 BAZ1AQ9NRL2 1556 aaPredicted RBP20.71■□□□□ 0.91
RET-201ENST00000340058 ABCC8Q09428 1581 aa20.67■□□□□ 0.9
RET-201ENST00000340058 GOLGA3Q08378 1498 aa20.64■□□□□ 0.89
RET-201ENST00000340058 CCDC88BA6NC98 1476 aa20.64■□□□□ 0.89
RET-201ENST00000340058 RRP7BPQ9NSQ0 103 aa20.62■□□□□ 0.89
RET-201ENST00000340058 MIER1Q8N108 512 aa20.62■□□□□ 0.89
RET-201ENST00000340058 CDK11AQ9UQ88 783 aaPredicted RBP20.61■□□□□ 0.89
RET-201ENST00000340058 TNIKQ9UKE5 1360 aa20.6■□□□□ 0.89
RET-201ENST00000340058 MTUS2Q5JR59 1369 aa20.6■□□□□ 0.89
RET-201ENST00000340058 CHMP7Q8WUX9 453 aaPredicted RBP20.59■□□□□ 0.89
RET-201ENST00000340058 TONSLQ96HA7 1378 aa20.56■□□□□ 0.88
RET-201ENST00000340058 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.54■□□□□ 0.88
RET-201ENST00000340058 EEA1Q15075 1411 aa20.53■□□□□ 0.88
RET-201ENST00000340058 WIZO95785 1651 aa20.53■□□□□ 0.88
RET-201ENST00000340058 KIF27Q86VH2 1401 aa20.51■□□□□ 0.87
RET-201ENST00000340058 KDM2AQ9Y2K7 1162 aa20.46■□□□□ 0.87
RET-201ENST00000340058 CEP164Q9UPV0 1460 aa20.46■□□□□ 0.87
RET-201ENST00000340058 KANK4Q5T7N3 995 aaPredicted RBP20.45■□□□□ 0.86
RET-201ENST00000340058 SIN3AQ96ST3 1273 aa20.45■□□□□ 0.86
RET-201ENST00000340058 SENP3-EIF4A1A0A087X0R7 540 aa20.45■□□□□ 0.86
RET-201ENST00000340058 SENP3Q9H4L4 574 aaPredicted RBP20.44■□□□□ 0.86
RET-201ENST00000340058 KCNH8Q96L42 1107 aa20.42■□□□□ 0.86
RET-201ENST00000340058 SALL2Q9Y467 1007 aaPredicted RBP20.42■□□□□ 0.86
RET-201ENST00000340058 CHGAP10645 457 aaKnown RBP20.42■□□□□ 0.86
RET-201ENST00000340058 SCAF1Q9H7N4 1312 aaKnown RBP20.42■□□□□ 0.86
RET-201ENST00000340058 FAM9BQ8IZU0 186 aa20.41■□□□□ 0.86
RET-201ENST00000340058 CUX2O14529 1486 aa20.38■□□□□ 0.85
RET-201ENST00000340058 HNRNPUQ00839 825 aaKnown RBP eCLIP20.38■□□□□ 0.85
RET-201ENST00000340058 RUSC2Q8N2Y8 1516 aa20.37■□□□□ 0.85
RET-201ENST00000340058 PLPPR3Q6T4P5 718 aa20.34■□□□□ 0.85
RET-201ENST00000340058 FKBP8Q14318 412 aa20.34■□□□□ 0.85
RET-201ENST00000340058 CARMIL1Q5VZK9 1371 aa20.34■□□□□ 0.85
RET-201ENST00000340058 TSPY4P0CV99 314 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms