RNA–Protein interactions for RNA: ENST00000609024.5

CHMP4A-211, Transcript of charged multivesicular body protein 4A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4A, Length 735 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-211ENST00000609024 NISCHQ9Y2I1 1504 aa43.73■■■■■ 4.59
CHMP4A-211ENST00000609024 ABCC9O60706 1549 aa39.89■■■■□ 3.98
CHMP4A-211ENST00000609024 CCDC180Q9P1Z9 1646 aa39.43■■■■□ 3.9
CHMP4A-211ENST00000609024 RB1CC1Q8TDY2 1594 aa37.8■■■■□ 3.64
CHMP4A-211ENST00000609024 DNAJC5BQ9UF47 199 aa37.68■■■■□ 3.62
CHMP4A-211ENST00000609024 NACADO15069 1562 aa37.41■■■■□ 3.58
CHMP4A-211ENST00000609024 DCAF8L2P0C7V8 631 aa37.34■■■■□ 3.57
CHMP4A-211ENST00000609024 PABPN1Q86U42 306 aaKnown RBP eCLIP37.1■■■■□ 3.53
CHMP4A-211ENST00000609024 UNC13AQ9UPW8 1703 aa36.82■■■■□ 3.49
CHMP4A-211ENST00000609024 MYO15BQ96JP2 1530 aa36.69■■■■□ 3.46
CHMP4A-211ENST00000609024 BICRAQ9NZM4 1560 aa36.57■■■■□ 3.44
CHMP4A-211ENST00000609024 SHROOM4Q9ULL8 1493 aa36.14■■■■□ 3.38
CHMP4A-211ENST00000609024 ZCCHC6Q5VYS8 1495 aaKnown RBP36.12■■■■□ 3.37
CHMP4A-211ENST00000609024 DCAF1Q9Y4B6 1507 aa36.07■■■■□ 3.36
CHMP4A-211ENST00000609024 CECR2Q9BXF3 1484 aa35.99■■■■□ 3.35
CHMP4A-211ENST00000609024 CC2D2AQ9P2K1 1620 aa35.97■■■■□ 3.35
CHMP4A-211ENST00000609024 SCRIBQ14160 1630 aa35.94■■■■□ 3.34
CHMP4A-211ENST00000609024 EIF4G1Q04637 1599 aaKnown RBP35.79■■■■□ 3.32
CHMP4A-211ENST00000609024 DNAJC5Q9H3Z4 198 aa35.01■■■■□ 3.2
CHMP4A-211ENST00000609024 ERCC6Q03468 1493 aa34.57■■■■□ 3.12
CHMP4A-211ENST00000609024 CUX2O14529 1486 aa34.56■■■■□ 3.12
CHMP4A-211ENST00000609024 NCAPD3P42695 1498 aa34.51■■■■□ 3.11
CHMP4A-211ENST00000609024 ATAD2BQ9ULI0 1458 aa34.34■■■■□ 3.09
CHMP4A-211ENST00000609024 SMARCA2P51531 1590 aa34.28■■■■□ 3.08
CHMP4A-211ENST00000609024 HMGXB3Q12766 1538 aa34.21■■■■□ 3.07
CHMP4A-211ENST00000609024 SMARCA4P51532 1647 aa34.21■■■■□ 3.07
CHMP4A-211ENST00000609024 NESP48681 1621 aa34.09■■■■□ 3.05
CHMP4A-211ENST00000609024 BAZ1BQ9UIG0 1483 aaKnown RBP34.07■■■■□ 3.04
CHMP4A-211ENST00000609024 BAZ1AQ9NRL2 1556 aaPredicted RBP34.02■■■■□ 3.04
CHMP4A-211ENST00000609024 LAMC3Q9Y6N6 1575 aa33.84■■■■□ 3.01
CHMP4A-211ENST00000609024 PEG3Q9GZU2 1588 aa33.82■■■■□ 3
CHMP4A-211ENST00000609024 THOC2Q8NI27 1593 aaKnown RBP33.81■■■■□ 3
CHMP4A-211ENST00000609024 PDS5BQ9NTI5 1447 aa33.72■■■□□ 2.99
CHMP4A-211ENST00000609024 MROH2BQ7Z745 1585 aa33.67■■■□□ 2.98
CHMP4A-211ENST00000609024 KIF21AQ7Z4S6 1674 aa33.64■■■□□ 2.98
CHMP4A-211ENST00000609024 CADPSQ9ULU8 1353 aa33.48■■■□□ 2.95
CHMP4A-211ENST00000609024 TRIM41Q8WV44 630 aa33.43■■■□□ 2.94
CHMP4A-211ENST00000609024 MRC2Q9UBG0 1479 aa33.4■■■□□ 2.94
CHMP4A-211ENST00000609024 WDR62O43379 1518 aa33.28■■■□□ 2.92
CHMP4A-211ENST00000609024 WIZO95785 1651 aa33.27■■■□□ 2.92
CHMP4A-211ENST00000609024 CEP164Q9UPV0 1460 aa33.21■■■□□ 2.91
CHMP4A-211ENST00000609024 FANCD2Q9BXW9 1451 aa33.11■■■□□ 2.89
CHMP4A-211ENST00000609024 OSCARQ8IYS5 282 aa33■■■□□ 2.87
CHMP4A-211ENST00000609024 CFTRP13569 1480 aa32.97■■■□□ 2.87
CHMP4A-211ENST00000609024 RSF1Q96T23 1441 aaPredicted RBP32.84■■■□□ 2.85
CHMP4A-211ENST00000609024 TOP2AP11388 1531 aaKnown RBP32.83■■■□□ 2.85
CHMP4A-211ENST00000609024 URB2Q14146 1524 aaKnown RBP32.8■■■□□ 2.84
CHMP4A-211ENST00000609024 PRDM2Q13029 1718 aa32.62■■■□□ 2.81
CHMP4A-211ENST00000609024 IFT140Q96RY7 1462 aa32.55■■■□□ 2.8
CHMP4A-211ENST00000609024 RIMBP3CA6NJZ7 1639 aa32.5■■■□□ 2.79
CHMP4A-211ENST00000609024 RIMBP3BA6NNM3 1639 aa32.5■■■□□ 2.79
CHMP4A-211ENST00000609024 RIMBP3Q9UFD9 1639 aa32.5■■■□□ 2.79
CHMP4A-211ENST00000609024 ZNF608Q9ULD9 1512 aaPredicted RBP32.47■■■□□ 2.79
CHMP4A-211ENST00000609024 CCDC88BA6NC98 1476 aa32.47■■■□□ 2.79
CHMP4A-211ENST00000609024 TOPBP1Q92547 1522 aa32.41■■■□□ 2.78
CHMP4A-211ENST00000609024 ABCC8Q09428 1581 aa32.39■■■□□ 2.78
CHMP4A-211ENST00000609024 ARHGEF11O15085 1522 aa32.36■■■□□ 2.77
CHMP4A-211ENST00000609024 EIF4G3O43432 1585 aaKnown RBP32.3■■■□□ 2.76
CHMP4A-211ENST00000609024 DNMBPQ6XZF7 1577 aa32.27■■■□□ 2.76
CHMP4A-211ENST00000609024 CYB5RLQ6IPT4 315 aa32.25■■■□□ 2.75
CHMP4A-211ENST00000609024 FBLN2P98095 1184 aa32.21■■■□□ 2.75
CHMP4A-211ENST00000609024 AQRO60306 1485 aaKnown RBP eCLIP32.17■■■□□ 2.744e-8■■■■□ 23.3
CHMP4A-211ENST00000609024 CHD1O14646 1710 aa32.14■■■□□ 2.74
CHMP4A-211ENST00000609024 TRHP20396 242 aaPredicted RBP32.13■■■□□ 2.73
CHMP4A-211ENST00000609024 TARBP1Q13395 1621 aaKnown RBP32.1■■■□□ 2.73
CHMP4A-211ENST00000609024 POLA1P09884 1462 aaPredicted RBP32.04■■■□□ 2.72
CHMP4A-211ENST00000609024 ARAP1Q96P48 1450 aa31.98■■■□□ 2.71
CHMP4A-211ENST00000609024 SOGA1O94964 1423 aa31.96■■■□□ 2.71
CHMP4A-211ENST00000609024 RAD54L2Q9Y4B4 1467 aa31.95■■■□□ 2.7
CHMP4A-211ENST00000609024 TDRD9Q8NDG6 1382 aaKnown RBP31.94■■■□□ 2.7
CHMP4A-211ENST00000609024 CHMP7Q8WUX9 453 aaPredicted RBP31.88■■■□□ 2.69
CHMP4A-211ENST00000609024 SNAPC4Q5SXM2 1469 aa31.84■■■□□ 2.69
CHMP4A-211ENST00000609024 WDR97A6NE52 1622 aa31.82■■■□□ 2.68
CHMP4A-211ENST00000609024 FGD5Q6ZNL6 1462 aa31.81■■■□□ 2.68
CHMP4A-211ENST00000609024 SYNJ1O43426 1573 aa31.77■■■□□ 2.68
CHMP4A-211ENST00000609024 MAGI1Q96QZ7 1491 aaPredicted RBP31.75■■■□□ 2.67
CHMP4A-211ENST00000609024 CLASP1Q7Z460 1538 aa31.72■■■□□ 2.67
CHMP4A-211ENST00000609024 GRIN2BQ13224 1484 aa31.72■■■□□ 2.67
CHMP4A-211ENST00000609024 CUX1P39880 1505 aa31.66■■■□□ 2.66
CHMP4A-211ENST00000609024 SYNJ2O15056 1496 aa31.65■■■□□ 2.66
CHMP4A-211ENST00000609024 GAPVD1Q14C86 1478 aa31.55■■■□□ 2.64
CHMP4A-211ENST00000609024 AEBP2Q6ZN18 517 aaPredicted RBP31.55■■■□□ 2.64
CHMP4A-211ENST00000609024 PBRM1Q86U86 1689 aa31.53■■■□□ 2.64
CHMP4A-211ENST00000609024 ABCA10Q8WWZ4 1543 aa31.4■■■□□ 2.62
CHMP4A-211ENST00000609024 ABCA5Q8WWZ7 1642 aa31.36■■■□□ 2.61
CHMP4A-211ENST00000609024 GRIN2AQ12879 1464 aa31.28■■■□□ 2.6
CHMP4A-211ENST00000609024 WRNQ14191 1432 aaPredicted RBP eCLIP31.27■■■□□ 2.6
CHMP4A-211ENST00000609024 SUPT5HO00267 1087 aaKnown RBP31.25■■■□□ 2.59
CHMP4A-211ENST00000609024 ADAMTS12P58397 1594 aa31.18■■■□□ 2.58
CHMP4A-211ENST00000609024 ERCC6L2Q5T890 1561 aa31.18■■■□□ 2.58
CHMP4A-211ENST00000609024 CEP170Q5SW79 1584 aa31.17■■■□□ 2.58
CHMP4A-211ENST00000609024 NUP160Q12769 1436 aa31.15■■■□□ 2.58
CHMP4A-211ENST00000609024 FHAD1B1AJZ9 1412 aa31.13■■■□□ 2.57
CHMP4A-211ENST00000609024 TOP2BQ02880 1626 aa31.07■■■□□ 2.56
CHMP4A-211ENST00000609024 BIVM-ERCC5R4GMW8 1640 aa31.06■■■□□ 2.56
CHMP4A-211ENST00000609024 SHROOM2Q13796 1616 aa31.04■■■□□ 2.56
CHMP4A-211ENST00000609024 ERICH3Q5RHP9 1530 aa31.02■■■□□ 2.56
CHMP4A-211ENST00000609024 PRG4Q92954 1404 aaPredicted RBP30.97■■■□□ 2.55
CHMP4A-211ENST00000609024 JPH4Q96JJ6 628 aa30.93■■■□□ 2.54
CHMP4A-211ENST00000609024 NPM1P06748 294 aaKnown RBP eCLIP30.92■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms