Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 LINC00628-201ENST00000628516 1289 ntBASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 AL033527.5-202ENST00000641632 1098 ntBASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 AC134684.3-201ENST00000641758 218 ntBASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
RSPO3Q9BXY4 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 AC254562.1-201ENST00000417586 456 ntBASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 AC069262.1-201ENST00000539058 672 ntBASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 AL589739.1-201ENST00000607720 493 ntBASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 AC232323.1-201ENST00000540724 2099 ntBASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 REXO1L5P-201ENST00000622260 2098 ntBASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RSPO3Q9BXY4 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 AC007686.3-201ENST00000619017 3487 ntBASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 CNN2P11-201ENST00000429351 262 ntBASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 MIR3687-2-201ENST00000577708 61 ntBASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RSPO3Q9BXY4 MIR3687-1-201ENST00000614492 61 ntBASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms