RNA–Protein interactions for RNA: ENST00000345662.5

SPAST-202, Transcript of spastin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SPAST, Length 5,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-202ENST00000345662 DCAF8L2P0C7V8 631 aa28.85■■■□□ 2.21
SPAST-202ENST00000345662 SUPT5HO00267 1087 aaKnown RBP28.43■■■□□ 2.14
SPAST-202ENST00000345662 NISCHQ9Y2I1 1504 aa28.17■■■□□ 2.1
SPAST-202ENST00000345662 PELP1Q8IZL8 1130 aaKnown RBP27.92■■■□□ 2.06
SPAST-202ENST00000345662 SHROOM4Q9ULL8 1493 aa27.69■■■□□ 2.02
SPAST-202ENST00000345662 PCGF6Q9BYE7 350 aa27.48■■□□□ 1.99
SPAST-202ENST00000345662 EHMT2Q96KQ7 1210 aa27.31■■□□□ 1.96
SPAST-202ENST00000345662 MYT1Q01538 1121 aa27.25■■□□□ 1.95
SPAST-202ENST00000345662 CENPBP07199 599 aaPredicted RBP27.19■■□□□ 1.94
SPAST-202ENST00000345662 ZEB1P37275 1124 aaPredicted RBP27.13■■□□□ 1.93
SPAST-202ENST00000345662 APLP2Q06481 763 aa26.84■■□□□ 1.89
SPAST-202ENST00000345662 FAM9AQ8IZU1 332 aaPredicted RBP26.75■■□□□ 1.87
SPAST-202ENST00000345662 ERICH6Q7L0X2 663 aa26.72■■□□□ 1.87
SPAST-202ENST00000345662 CCER1Q8TC90 406 aaPredicted RBP26.66■■□□□ 1.86
SPAST-202ENST00000345662 HRCP23327 699 aa26.61■■□□□ 1.85
SPAST-202ENST00000345662 TTBK1Q5TCY1 1321 aaPredicted RBP26.57■■□□□ 1.84
SPAST-202ENST00000345662 YTHDC1Q96MU7 727 aaKnown RBP26.34■■□□□ 1.81
SPAST-202ENST00000345662 TRIM41Q8WV44 630 aa26.31■■□□□ 1.8
SPAST-202ENST00000345662 TRIM26Q12899 539 aaPredicted RBP26.27■■□□□ 1.8
SPAST-202ENST00000345662 NEFLP07196 543 aa26.22■■□□□ 1.79
SPAST-202ENST00000345662 PPARGC1BQ86YN6 1023 aaKnown RBP25.95■■□□□ 1.74
SPAST-202ENST00000345662 RANGAP1P46060 587 aaPredicted RBP25.86■■□□□ 1.73
SPAST-202ENST00000345662 UBTFP17480 764 aaKnown RBP25.83■■□□□ 1.73
SPAST-202ENST00000345662 CHIC1Q5VXU3 224 aa25.7■■□□□ 1.7
SPAST-202ENST00000345662 LOC105371045A0A1W2PR82 267 aa25.65■■□□□ 1.7
SPAST-202ENST00000345662 DIEXFQ68CQ4 756 aaKnown RBP25.53■■□□□ 1.68
SPAST-202ENST00000345662 ATP1B4Q9UN42 357 aaPredicted RBP25.5■■□□□ 1.67
SPAST-202ENST00000345662 GTF3C3Q9Y5Q9 886 aa25.39■■□□□ 1.65
SPAST-202ENST00000345662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.33■■□□□ 1.65
SPAST-202ENST00000345662 DAXXQ9UER7 740 aaPredicted RBP25.31■■□□□ 1.64
SPAST-202ENST00000345662 HNRNPUL2Q1KMD3 747 aaKnown RBP25.24■■□□□ 1.63
SPAST-202ENST00000345662 RTL5Q5HYW3 569 aaPredicted RBP25.16■■□□□ 1.62
SPAST-202ENST00000345662 ACIN1Q9UKV3 1341 aaKnown RBP25.11■■□□□ 1.61
SPAST-202ENST00000345662 ITGAEP38570 1179 aa25.08■■□□□ 1.61
SPAST-202ENST00000345662 BCANQ96GW7 911 aa24.89■■□□□ 1.58
SPAST-202ENST00000345662 POLR3GLQ9BT43 218 aa24.88■■□□□ 1.57
SPAST-202ENST00000345662 ZNF316A6NFI3 1004 aaPredicted RBP24.85■■□□□ 1.57
SPAST-202ENST00000345662 CDK11AQ9UQ88 783 aaPredicted RBP24.76■■□□□ 1.55
SPAST-202ENST00000345662 CNGB1Q14028 1251 aaPredicted RBP24.71■■□□□ 1.55
SPAST-202ENST00000345662 CLSPNQ9HAW4 1339 aa24.59■■□□□ 1.53
SPAST-202ENST00000345662 ANP32CO43423 234 aa24.58■■□□□ 1.53
SPAST-202ENST00000345662 SCAF1Q9H7N4 1312 aaKnown RBP24.54■■□□□ 1.52
SPAST-202ENST00000345662 NEUROD1Q13562 356 aa24.48■■□□□ 1.51
SPAST-202ENST00000345662 DCAF1Q9Y4B6 1507 aa24.44■■□□□ 1.5
SPAST-202ENST00000345662 FAM50AQ14320 339 aaKnown RBP24.4■■□□□ 1.5
SPAST-202ENST00000345662 ANP32AP39687 249 aaKnown RBP24.34■■□□□ 1.49
SPAST-202ENST00000345662 MYT1LQ9UL68 1186 aa24.29■■□□□ 1.48
SPAST-202ENST00000345662 FKBP8Q14318 412 aa24.28■■□□□ 1.48
SPAST-202ENST00000345662 TRIM52Q96A61 297 aa24.21■■□□□ 1.47
SPAST-202ENST00000345662 EIF5BO60841 1220 aaKnown RBP24.15■■□□□ 1.46
SPAST-202ENST00000345662 SLC4A1APQ9BWU0 796 aaKnown RBP24.05■■□□□ 1.44
SPAST-202ENST00000345662 NPM2Q86SE8 214 aaKnown RBP24.05■■□□□ 1.44
SPAST-202ENST00000345662 CSRNP3Q8WYN3 585 aa23.97■■□□□ 1.43
SPAST-202ENST00000345662 MIER1Q8N108 512 aa23.96■■□□□ 1.43
SPAST-202ENST00000345662 ZNF326Q5BKZ1 582 aaKnown RBP23.96■■□□□ 1.43
SPAST-202ENST00000345662 HNRNPUQ00839 825 aaKnown RBP eCLIP23.93■■□□□ 1.42
SPAST-202ENST00000345662 GLIPR1L2Q4G1C9 344 aa23.92■■□□□ 1.42
SPAST-202ENST00000345662 ANP32EQ9BTT0 268 aa23.92■■□□□ 1.42
SPAST-202ENST00000345662 NBR1Q14596 966 aa23.89■■□□□ 1.42
SPAST-202ENST00000345662 DDX10Q13206 875 aaKnown RBP23.88■■□□□ 1.41
SPAST-202ENST00000345662 ZBTB47Q9UFB7 747 aaPredicted RBP23.86■■□□□ 1.41
SPAST-202ENST00000345662 CANXP27824 592 aaKnown RBP23.85■■□□□ 1.41
SPAST-202ENST00000345662 CCDC136Q96JN2 1154 aa23.74■■□□□ 1.39
SPAST-202ENST00000345662 TONSLQ96HA7 1378 aa23.73■■□□□ 1.39
SPAST-202ENST00000345662 ANP32BQ92688 251 aaKnown RBP23.71■■□□□ 1.39
SPAST-202ENST00000345662 FAM9BQ8IZU0 186 aa23.71■■□□□ 1.39
SPAST-202ENST00000345662 MYO15BQ96JP2 1530 aa23.71■■□□□ 1.39
SPAST-202ENST00000345662 CCDC180Q9P1Z9 1646 aa23.66■■□□□ 1.38
SPAST-202ENST00000345662 UPF2Q9HAU5 1272 aaKnown RBP23.6■■□□□ 1.37
SPAST-202ENST00000345662 IRX6P78412 446 aaPredicted RBP23.58■■□□□ 1.36
SPAST-202ENST00000345662 P3H3Q8IVL6 736 aa23.52■■□□□ 1.36
SPAST-202ENST00000345662 HSP90AA1P07900 732 aaKnown RBP23.51■■□□□ 1.35
SPAST-202ENST00000345662 BCL11AQ9H165 835 aa23.51■■□□□ 1.35
SPAST-202ENST00000345662 ABCC9O60706 1549 aa23.5■■□□□ 1.35
SPAST-202ENST00000345662 PABPN1Q86U42 306 aaKnown RBP eCLIP23.5■■□□□ 1.35
SPAST-202ENST00000345662 MRS2Q9HD23 443 aa23.49■■□□□ 1.35
SPAST-202ENST00000345662 SUPT16HQ9Y5B9 1047 aaKnown RBP23.45■■□□□ 1.34
SPAST-202ENST00000345662 TMC1Q8TDI8 760 aa23.45■■□□□ 1.34
SPAST-202ENST00000345662 ZCCHC6Q5VYS8 1495 aaKnown RBP23.43■■□□□ 1.34
SPAST-202ENST00000345662 NEFMP07197 916 aa23.42■■□□□ 1.34
SPAST-202ENST00000345662 SALL2Q9Y467 1007 aaPredicted RBP23.41■■□□□ 1.34
SPAST-202ENST00000345662 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.39■■□□□ 1.33
SPAST-202ENST00000345662 ARXQ96QS3 562 aa23.39■■□□□ 1.33
SPAST-202ENST00000345662 DDRGK1Q96HY6 314 aa23.38■■□□□ 1.33
SPAST-202ENST00000345662 HIRIP3Q9BW71 556 aaPredicted RBP23.33■■□□□ 1.32
SPAST-202ENST00000345662 PPM1GO15355 546 aaPredicted RBP23.27■■□□□ 1.32
SPAST-202ENST00000345662 ARID3CA6NKF2 412 aa23.24■■□□□ 1.31
SPAST-202ENST00000345662 NOP58Q9Y2X3 529 aaKnown RBP23.24■■□□□ 1.31
SPAST-202ENST00000345662 CLIP1P30622 1438 aa23.23■■□□□ 1.31
SPAST-202ENST00000345662 PPP4R2Q9NY27 417 aa23.22■■□□□ 1.31
SPAST-202ENST00000345662 EIF4G2P78344 907 aaKnown RBP eCLIP23.22■■□□□ 1.31
SPAST-202ENST00000345662 ZNF777Q9ULD5 760 aaPredicted RBP23.22■■□□□ 1.31
SPAST-202ENST00000345662 ERICH6BQ5W0A0 696 aa23.21■■□□□ 1.31
SPAST-202ENST00000345662 BECN1Q14457 450 aa23.2■■□□□ 1.31
SPAST-202ENST00000345662 CEP162Q5TB80 1403 aa23.19■■□□□ 1.3
SPAST-202ENST00000345662 RTN4Q9NQC3 1192 aaKnown RBP23.18■■□□□ 1.3
SPAST-202ENST00000345662 TRIM44Q96DX7 344 aaPredicted RBP23.17■■□□□ 1.3
SPAST-202ENST00000345662 WDR43Q15061 677 aaKnown RBP eCLIP23.16■■□□□ 1.3
SPAST-202ENST00000345662 RBM19Q9Y4C8 960 aaKnown RBP23.14■■□□□ 1.3
SPAST-202ENST00000345662 SLC24A1O60721 1099 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms