Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 KRT8P22-201ENST00000562317 1415 ntBASIC16.56■□□□□ 0.24
CDH9Q9ULB4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 GIMAP3P-201ENST00000495150 836 ntBASIC16.56■□□□□ 0.24
CDH9Q9ULB4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 AC026410.3-201ENST00000514280 936 ntBASIC16.56■□□□□ 0.24
CDH9Q9ULB4 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 AC124283.3-201ENST00000570869 594 ntBASIC16.56■□□□□ 0.24
CDH9Q9ULB4 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CDH9Q9ULB4 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 DRD5P1-201ENST00000456605 1438 ntBASIC16.55■□□□□ 0.24
CDH9Q9ULB4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 C1QBPP1-201ENST00000400117 770 ntBASIC16.55■□□□□ 0.24
CDH9Q9ULB4 SOCS2P1-201ENST00000417727 557 ntBASIC16.55■□□□□ 0.24
CDH9Q9ULB4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 ENPP7P5-201ENST00000541031 1031 ntBASIC16.55■□□□□ 0.24
CDH9Q9ULB4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH9Q9ULB4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 AC007389.4-201ENST00000454674 793 ntBASIC16.54■□□□□ 0.24
CDH9Q9ULB4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.54■□□□□ 0.24
CDH9Q9ULB4 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms