Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH6P55285 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH6P55285 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH6P55285 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CDH6P55285 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH6P55285 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH6P55285 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CDH6P55285 AC004449.1-201ENST00000564240 433 ntBASIC16.4■□□□□ 0.22
CDH6P55285 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.4■□□□□ 0.22
CDH6P55285 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 AL109954.1-202ENST00000564051 2148 ntBASIC16.4■□□□□ 0.22
CDH6P55285 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH6P55285 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH6P55285 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CDH6P55285 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.4■□□□□ 0.22
CDH6P55285 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH6P55285 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
CDH6P55285 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CDH6P55285 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.39■□□□□ 0.21
CDH6P55285 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.39■□□□□ 0.21
CDH6P55285 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CDH6P55285 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CDH6P55285 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CDH6P55285 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.39■□□□□ 0.21
CDH6P55285 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 AL080243.2-201ENST00000418783 582 ntBASIC16.39■□□□□ 0.21
CDH6P55285 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.39■□□□□ 0.21
CDH6P55285 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.39■□□□□ 0.21
CDH6P55285 AC015911.4-201ENST00000588022 1070 ntBASIC16.39■□□□□ 0.21
CDH6P55285 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.39■□□□□ 0.21
CDH6P55285 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CDH6P55285 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.39■□□□□ 0.21
CDH6P55285 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
CDH6P55285 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.39■□□□□ 0.21
CDH6P55285 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.39■□□□□ 0.21
CDH6P55285 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CDH6P55285 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CDH6P55285 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDH6P55285 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.39■□□□□ 0.21
CDH6P55285 C18orf15-201ENST00000623680 2534 ntBASIC16.39■□□□□ 0.21
CDH6P55285 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CDH6P55285 AC112693.3-201ENST00000624819 1983 ntBASIC16.38■□□□□ 0.21
CDH6P55285 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CDH6P55285 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH6P55285 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH6P55285 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.38■□□□□ 0.21
CDH6P55285 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CDH6P55285 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CDH6P55285 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CDH6P55285 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH6P55285 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CDH6P55285 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH6P55285 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDH6P55285 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms