RNA–Protein interactions for RNA: ENST00000368409.7

EFNA4-202, Transcript of ephrin A4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene EFNA4, Length 1,263 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EFNA4-202ENST00000368409 NISCHQ9Y2I1 1504 aa41.45■■■■■ 4.23
EFNA4-202ENST00000368409 CCDC180Q9P1Z9 1646 aa37.32■■■■□ 3.57
EFNA4-202ENST00000368409 ABCC9O60706 1549 aa37.1■■■■□ 3.53
EFNA4-202ENST00000368409 RB1CC1Q8TDY2 1594 aa35.42■■■■□ 3.26
EFNA4-202ENST00000368409 NACADO15069 1562 aa35.18■■■■□ 3.22
EFNA4-202ENST00000368409 UNC13AQ9UPW8 1703 aa34.76■■■■□ 3.16
EFNA4-202ENST00000368409 MYO15BQ96JP2 1530 aa34.74■■■■□ 3.15
EFNA4-202ENST00000368409 DCAF8L2P0C7V8 631 aa34.72■■■■□ 3.15
EFNA4-202ENST00000368409 DNAJC5BQ9UF47 199 aa34.71■■■■□ 3.15
EFNA4-202ENST00000368409 PABPN1Q86U42 306 aaKnown RBP eCLIP34.44■■■■□ 3.1
EFNA4-202ENST00000368409 BICRAQ9NZM4 1560 aa34.41■■■■□ 3.1
EFNA4-202ENST00000368409 ZCCHC6Q5VYS8 1495 aaKnown RBP34.39■■■■□ 3.1
EFNA4-202ENST00000368409 DCAF1Q9Y4B6 1507 aa34.3■■■■□ 3.08
EFNA4-202ENST00000368409 SHROOM4Q9ULL8 1493 aa33.98■■■■□ 3.03
EFNA4-202ENST00000368409 SCRIBQ14160 1630 aa33.9■■■■□ 3.02
EFNA4-202ENST00000368409 CC2D2AQ9P2K1 1620 aa33.6■■■□□ 2.97
EFNA4-202ENST00000368409 EIF4G1Q04637 1599 aaKnown RBP33.54■■■□□ 2.96
EFNA4-202ENST00000368409 CECR2Q9BXF3 1484 aa33.44■■■□□ 2.94
EFNA4-202ENST00000368409 NCAPD3P42695 1498 aa32.43■■■□□ 2.78
EFNA4-202ENST00000368409 SMARCA4P51532 1647 aa32.38■■■□□ 2.77
EFNA4-202ENST00000368409 ATAD2BQ9ULI0 1458 aa32.33■■■□□ 2.77
EFNA4-202ENST00000368409 SMARCA2P51531 1590 aa32.28■■■□□ 2.76
EFNA4-202ENST00000368409 HMGXB3Q12766 1538 aa32.26■■■□□ 2.76
EFNA4-202ENST00000368409 BAZ1AQ9NRL2 1556 aaPredicted RBP32.19■■■□□ 2.74
EFNA4-202ENST00000368409 PEG3Q9GZU2 1588 aa32.1■■■□□ 2.73
EFNA4-202ENST00000368409 CUX2O14529 1486 aa32.03■■■□□ 2.72
EFNA4-202ENST00000368409 ERCC6Q03468 1493 aa32.03■■■□□ 2.72
EFNA4-202ENST00000368409 BAZ1BQ9UIG0 1483 aaKnown RBP32.03■■■□□ 2.72
EFNA4-202ENST00000368409 MROH2BQ7Z745 1585 aa31.93■■■□□ 2.7
EFNA4-202ENST00000368409 NESP48681 1621 aa31.9■■■□□ 2.7
EFNA4-202ENST00000368409 DNAJC5Q9H3Z4 198 aa31.87■■■□□ 2.69
EFNA4-202ENST00000368409 LAMC3Q9Y6N6 1575 aa31.76■■■□□ 2.67
EFNA4-202ENST00000368409 THOC2Q8NI27 1593 aaKnown RBP31.68■■■□□ 2.66
EFNA4-202ENST00000368409 KIF21AQ7Z4S6 1674 aa31.61■■■□□ 2.65
EFNA4-202ENST00000368409 WIZO95785 1651 aa31.58■■■□□ 2.65
EFNA4-202ENST00000368409 PDS5BQ9NTI5 1447 aa31.48■■■□□ 2.63
EFNA4-202ENST00000368409 CADPSQ9ULU8 1353 aa31.4■■■□□ 2.62
EFNA4-202ENST00000368409 MRC2Q9UBG0 1479 aa31.25■■■□□ 2.59
EFNA4-202ENST00000368409 RSF1Q96T23 1441 aaPredicted RBP31.24■■■□□ 2.59
EFNA4-202ENST00000368409 WDR62O43379 1518 aa31.22■■■□□ 2.59
EFNA4-202ENST00000368409 TOP2AP11388 1531 aaKnown RBP31.19■■■□□ 2.58
EFNA4-202ENST00000368409 CEP164Q9UPV0 1460 aa31.13■■■□□ 2.57
EFNA4-202ENST00000368409 CFTRP13569 1480 aa31.1■■■□□ 2.57
EFNA4-202ENST00000368409 FANCD2Q9BXW9 1451 aa31.08■■■□□ 2.57
EFNA4-202ENST00000368409 PRDM2Q13029 1718 aa31■■■□□ 2.55
EFNA4-202ENST00000368409 URB2Q14146 1524 aaKnown RBP30.85■■■□□ 2.53
EFNA4-202ENST00000368409 CCDC88BA6NC98 1476 aa30.76■■■□□ 2.52
EFNA4-202ENST00000368409 TOPBP1Q92547 1522 aa30.52■■■□□ 2.48
EFNA4-202ENST00000368409 IFT140Q96RY7 1462 aa30.5■■■□□ 2.47
EFNA4-202ENST00000368409 DNMBPQ6XZF7 1577 aa30.45■■■□□ 2.46
EFNA4-202ENST00000368409 ZNF608Q9ULD9 1512 aaPredicted RBP30.44■■■□□ 2.46
EFNA4-202ENST00000368409 ABCC8Q09428 1581 aa30.44■■■□□ 2.46
EFNA4-202ENST00000368409 OSCARQ8IYS5 282 aa30.43■■■□□ 2.46
EFNA4-202ENST00000368409 TRIM41Q8WV44 630 aa30.41■■■□□ 2.46
EFNA4-202ENST00000368409 EIF4G3O43432 1585 aaKnown RBP30.37■■■□□ 2.45
EFNA4-202ENST00000368409 TARBP1Q13395 1621 aaKnown RBP30.31■■■□□ 2.44
EFNA4-202ENST00000368409 POLA1P09884 1462 aaPredicted RBP30.2■■■□□ 2.43
EFNA4-202ENST00000368409 RIMBP3CA6NJZ7 1639 aa30.2■■■□□ 2.43
EFNA4-202ENST00000368409 RIMBP3BA6NNM3 1639 aa30.2■■■□□ 2.43
EFNA4-202ENST00000368409 RIMBP3Q9UFD9 1639 aa30.2■■■□□ 2.43
EFNA4-202ENST00000368409 CHD1O14646 1710 aa30.16■■■□□ 2.42
EFNA4-202ENST00000368409 AQRO60306 1485 aaKnown RBP eCLIP30.12■■■□□ 2.41
EFNA4-202ENST00000368409 ARHGEF11O15085 1522 aa30.07■■■□□ 2.4
EFNA4-202ENST00000368409 RAD54L2Q9Y4B4 1467 aa30.04■■■□□ 2.4
EFNA4-202ENST00000368409 WDR97A6NE52 1622 aa30.04■■■□□ 2.4
EFNA4-202ENST00000368409 CUX1P39880 1505 aa30.01■■■□□ 2.4
EFNA4-202ENST00000368409 FGD5Q6ZNL6 1462 aa30.01■■■□□ 2.4
EFNA4-202ENST00000368409 SOGA1O94964 1423 aa29.99■■■□□ 2.39
EFNA4-202ENST00000368409 TDRD9Q8NDG6 1382 aaKnown RBP29.91■■■□□ 2.38
EFNA4-202ENST00000368409 SNAPC4Q5SXM2 1469 aa29.87■■■□□ 2.37
EFNA4-202ENST00000368409 MAGI1Q96QZ7 1491 aaPredicted RBP29.81■■■□□ 2.36
EFNA4-202ENST00000368409 FBLN2P98095 1184 aa29.81■■■□□ 2.36
EFNA4-202ENST00000368409 PBRM1Q86U86 1689 aa29.8■■■□□ 2.36
EFNA4-202ENST00000368409 CLASP1Q7Z460 1538 aa29.78■■■□□ 2.36
EFNA4-202ENST00000368409 GRIN2BQ13224 1484 aa29.78■■■□□ 2.36
EFNA4-202ENST00000368409 ARAP1Q96P48 1450 aa29.78■■■□□ 2.36
EFNA4-202ENST00000368409 SYNJ1O43426 1573 aa29.73■■■□□ 2.35
EFNA4-202ENST00000368409 ABCA5Q8WWZ7 1642 aa29.72■■■□□ 2.35
EFNA4-202ENST00000368409 SUPT5HO00267 1087 aaKnown RBP29.72■■■□□ 2.35
EFNA4-202ENST00000368409 SYNJ2O15056 1496 aa29.7■■■□□ 2.35
EFNA4-202ENST00000368409 CYB5RLQ6IPT4 315 aa29.69■■■□□ 2.34
EFNA4-202ENST00000368409 ABCA10Q8WWZ4 1543 aa29.69■■■□□ 2.34
EFNA4-202ENST00000368409 GAPVD1Q14C86 1478 aa29.67■■■□□ 2.34
EFNA4-202ENST00000368409 CHMP7Q8WUX9 453 aaPredicted RBP29.63■■■□□ 2.33
EFNA4-202ENST00000368409 BIVM-ERCC5R4GMW8 1640 aa29.62■■■□□ 2.33
EFNA4-202ENST00000368409 TOP2BQ02880 1626 aa29.58■■■□□ 2.33
EFNA4-202ENST00000368409 WRNQ14191 1432 aaPredicted RBP eCLIP29.52■■■□□ 2.32
EFNA4-202ENST00000368409 ADAMTS12P58397 1594 aa29.47■■■□□ 2.31
EFNA4-202ENST00000368409 GRIN2AQ12879 1464 aa29.42■■■□□ 2.3
EFNA4-202ENST00000368409 CEP170Q5SW79 1584 aa29.35■■■□□ 2.29
EFNA4-202ENST00000368409 ERICH3Q5RHP9 1530 aa29.34■■■□□ 2.29
EFNA4-202ENST00000368409 NUP160Q12769 1436 aa29.32■■■□□ 2.28
EFNA4-202ENST00000368409 TRHP20396 242 aaPredicted RBP29.32■■■□□ 2.28
EFNA4-202ENST00000368409 FHAD1B1AJZ9 1412 aa29.29■■■□□ 2.28
EFNA4-202ENST00000368409 SHROOM2Q13796 1616 aa29.28■■■□□ 2.28
EFNA4-202ENST00000368409 ERCC6L2Q5T890 1561 aa29.27■■■□□ 2.28
EFNA4-202ENST00000368409 RUSC2Q8N2Y8 1516 aa29.08■■■□□ 2.25
EFNA4-202ENST00000368409 PRG4Q92954 1404 aaPredicted RBP28.97■■■□□ 2.23
EFNA4-202ENST00000368409 CUL7Q14999 1698 aa28.97■■■□□ 2.23
EFNA4-202ENST00000368409 KIF13AQ9H1H9 1805 aa28.9■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms