RNA–Protein interactions for RNA: ENST00000347968.7

MBD1-204, Transcript of methyl-CpG binding domain protein 1, humanhuman

TSL 1 (best) BASIC

Gene MBD1, Length 3,091 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD1-204ENST00000347968 NISCHQ9Y2I1 1504 aa31.15■■■□□ 2.58
MBD1-204ENST00000347968 HRCP23327 699 aa27.71■■■□□ 2.03
MBD1-204ENST00000347968 PPARGC1BQ86YN6 1023 aaKnown RBP27.59■■■□□ 2.01
MBD1-204ENST00000347968 PELP1Q8IZL8 1130 aaKnown RBP27.2■■□□□ 1.95
MBD1-204ENST00000347968 PCGF6Q9BYE7 350 aa27.2■■□□□ 1.94
MBD1-204ENST00000347968 SUPT5HO00267 1087 aaKnown RBP26.72■■□□□ 1.87
MBD1-204ENST00000347968 SCAF1Q9H7N4 1312 aaKnown RBP26.72■■□□□ 1.87
MBD1-204ENST00000347968 CCDC180Q9P1Z9 1646 aa26.69■■□□□ 1.86
MBD1-204ENST00000347968 SHROOM4Q9ULL8 1493 aa26.62■■□□□ 1.85
MBD1-204ENST00000347968 MYO15BQ96JP2 1530 aa26.49■■□□□ 1.83
MBD1-204ENST00000347968 DCAF8L2P0C7V8 631 aa26.32■■□□□ 1.8
MBD1-204ENST00000347968 ZCCHC6Q5VYS8 1495 aaKnown RBP26.2■■□□□ 1.78
MBD1-204ENST00000347968 MYT1Q01538 1121 aa26.14■■□□□ 1.77
MBD1-204ENST00000347968 CHIC1Q5VXU3 224 aa26.13■■□□□ 1.77
MBD1-204ENST00000347968 LOC105371045A0A1W2PR82 267 aa25.93■■□□□ 1.74
MBD1-204ENST00000347968 NEUROD1Q13562 356 aa25.82■■□□□ 1.72
MBD1-204ENST00000347968 TRIM26Q12899 539 aaPredicted RBP25.79■■□□□ 1.72
MBD1-204ENST00000347968 GTF3C3Q9Y5Q9 886 aa25.74■■□□□ 1.71
MBD1-204ENST00000347968 ACIN1Q9UKV3 1341 aaKnown RBP25.72■■□□□ 1.71
MBD1-204ENST00000347968 DCAF1Q9Y4B6 1507 aa25.61■■□□□ 1.69
MBD1-204ENST00000347968 ABCC9O60706 1549 aa25.55■■□□□ 1.68
MBD1-204ENST00000347968 ZEB1P37275 1124 aaPredicted RBP25.55■■□□□ 1.68
MBD1-204ENST00000347968 CENPBP07199 599 aaPredicted RBP25.24■■□□□ 1.63
MBD1-204ENST00000347968 YTHDC1Q96MU7 727 aaKnown RBP25.12■■□□□ 1.61
MBD1-204ENST00000347968 EHMT2Q96KQ7 1210 aa25.11■■□□□ 1.61
MBD1-204ENST00000347968 SCRIBQ14160 1630 aa25.11■■□□□ 1.61
MBD1-204ENST00000347968 DIEXFQ68CQ4 756 aaKnown RBP25.07■■□□□ 1.6
MBD1-204ENST00000347968 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.04■■□□□ 1.6
MBD1-204ENST00000347968 BCL11AQ9H165 835 aa25.01■■□□□ 1.59
MBD1-204ENST00000347968 FAM9AQ8IZU1 332 aaPredicted RBP24.91■■□□□ 1.58
MBD1-204ENST00000347968 NACADO15069 1562 aa24.88■■□□□ 1.57
MBD1-204ENST00000347968 CCER1Q8TC90 406 aaPredicted RBP24.87■■□□□ 1.57
MBD1-204ENST00000347968 RB1CC1Q8TDY2 1594 aa24.65■■□□□ 1.54
MBD1-204ENST00000347968 TTBK1Q5TCY1 1321 aaPredicted RBP24.57■■□□□ 1.52
MBD1-204ENST00000347968 ANP32EQ9BTT0 268 aa24.52■■□□□ 1.52
MBD1-204ENST00000347968 CSRNP3Q8WYN3 585 aa24.5■■□□□ 1.51
MBD1-204ENST00000347968 MIER1Q8N108 512 aa24.46■■□□□ 1.51
MBD1-204ENST00000347968 CECR2Q9BXF3 1484 aa24.45■■□□□ 1.5
MBD1-204ENST00000347968 RSF1Q96T23 1441 aaPredicted RBP24.44■■□□□ 1.5
MBD1-204ENST00000347968 TRIM41Q8WV44 630 aa24.43■■□□□ 1.5
MBD1-204ENST00000347968 PRKCSHP14314 528 aaPredicted RBP24.39■■□□□ 1.5
MBD1-204ENST00000347968 PABPN1Q86U42 306 aaKnown RBP eCLIP24.38■■□□□ 1.49
MBD1-204ENST00000347968 ZNF316A6NFI3 1004 aaPredicted RBP24.33■■□□□ 1.48
MBD1-204ENST00000347968 TSHZ2Q9NRE2 1034 aa24.3■■□□□ 1.48
MBD1-204ENST00000347968 UNC13AQ9UPW8 1703 aa24.27■■□□□ 1.48
MBD1-204ENST00000347968 MROH2BQ7Z745 1585 aa24.25■■□□□ 1.47
MBD1-204ENST00000347968 SUPT16HQ9Y5B9 1047 aaKnown RBP24.24■■□□□ 1.47
MBD1-204ENST00000347968 WIZO95785 1651 aa24.09■■□□□ 1.45
MBD1-204ENST00000347968 BCANQ96GW7 911 aa24.04■■□□□ 1.44
MBD1-204ENST00000347968 BICRAQ9NZM4 1560 aa24.03■■□□□ 1.44
MBD1-204ENST00000347968 BAZ1AQ9NRL2 1556 aaPredicted RBP23.96■■□□□ 1.43
MBD1-204ENST00000347968 SMARCA4P51532 1647 aa23.86■■□□□ 1.41
MBD1-204ENST00000347968 HNRNPUL2Q1KMD3 747 aaKnown RBP23.71■■□□□ 1.39
MBD1-204ENST00000347968 RBM19Q9Y4C8 960 aaKnown RBP23.67■■□□□ 1.38
MBD1-204ENST00000347968 ITGAEP38570 1179 aa23.63■■□□□ 1.37
MBD1-204ENST00000347968 TOP2AP11388 1531 aaKnown RBP23.63■■□□□ 1.37
MBD1-204ENST00000347968 FKBP8Q14318 412 aa23.61■■□□□ 1.37
MBD1-204ENST00000347968 MSH5O43196 834 aa23.59■■□□□ 1.37
MBD1-204ENST00000347968 KCNH8Q96L42 1107 aa23.59■■□□□ 1.37
MBD1-204ENST00000347968 CLSPNQ9HAW4 1339 aa23.58■■□□□ 1.37
MBD1-204ENST00000347968 CCDC88BA6NC98 1476 aa23.58■■□□□ 1.37
MBD1-204ENST00000347968 ANO8Q9HCE9 1232 aaPredicted RBP23.58■■□□□ 1.36
MBD1-204ENST00000347968 SMARCA2P51531 1590 aa23.5■■□□□ 1.35
MBD1-204ENST00000347968 ATAD2BQ9ULI0 1458 aa23.44■■□□□ 1.34
MBD1-204ENST00000347968 ERICH6Q7L0X2 663 aa23.41■■□□□ 1.34
MBD1-204ENST00000347968 ABCC8Q09428 1581 aa23.36■■□□□ 1.33
MBD1-204ENST00000347968 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
MBD1-204ENST00000347968 EIF4G1Q04637 1599 aaKnown RBP23.36■■□□□ 1.33
MBD1-204ENST00000347968 PEG3Q9GZU2 1588 aa23.34■■□□□ 1.33
MBD1-204ENST00000347968 CCDC136Q96JN2 1154 aa23.32■■□□□ 1.32
MBD1-204ENST00000347968 DEKP35659 375 aaKnown RBP23.3■■□□□ 1.32
MBD1-204ENST00000347968 SALL2Q9Y467 1007 aaPredicted RBP23.26■■□□□ 1.31
MBD1-204ENST00000347968 CEP162Q5TB80 1403 aa23.23■■□□□ 1.31
MBD1-204ENST00000347968 NEFLP07196 543 aa23.22■■□□□ 1.31
MBD1-204ENST00000347968 UBTFP17480 764 aaKnown RBP23.18■■□□□ 1.3
MBD1-204ENST00000347968 TRIM52Q96A61 297 aa23.16■■□□□ 1.3
MBD1-204ENST00000347968 APLP2Q06481 763 aa23.16■■□□□ 1.3
MBD1-204ENST00000347968 WRNQ14191 1432 aaPredicted RBP eCLIP23.15■■□□□ 1.3
MBD1-204ENST00000347968 NBR1Q14596 966 aa23.13■■□□□ 1.29
MBD1-204ENST00000347968 IRX6P78412 446 aaPredicted RBP23.12■■□□□ 1.29
MBD1-204ENST00000347968 RTN4Q9NQC3 1192 aaKnown RBP23.1■■□□□ 1.29
MBD1-204ENST00000347968 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.07■■□□□ 1.28
MBD1-204ENST00000347968 NCAPD3P42695 1498 aa23.05■■□□□ 1.28
MBD1-204ENST00000347968 RANGAP1P46060 587 aaPredicted RBP23.02■■□□□ 1.28
MBD1-204ENST00000347968 SOGA1O94964 1423 aa23.01■■□□□ 1.27
MBD1-204ENST00000347968 FANCIQ9NVI1 1328 aa22.97■■□□□ 1.27
MBD1-204ENST00000347968 DDX10Q13206 875 aaKnown RBP22.97■■□□□ 1.27
MBD1-204ENST00000347968 HMGXB3Q12766 1538 aa22.96■■□□□ 1.27
MBD1-204ENST00000347968 RUSC2Q8N2Y8 1516 aa22.96■■□□□ 1.27
MBD1-204ENST00000347968 IL27Q8NEV9 243 aa22.93■■□□□ 1.26
MBD1-204ENST00000347968 CDK11AQ9UQ88 783 aaPredicted RBP22.93■■□□□ 1.26
MBD1-204ENST00000347968 CC2D2AQ9P2K1 1620 aa22.91■■□□□ 1.26
MBD1-204ENST00000347968 SYNJ1O43426 1573 aa22.9■■□□□ 1.26
MBD1-204ENST00000347968 HIRIP3Q9BW71 556 aaPredicted RBP22.87■■□□□ 1.25
MBD1-204ENST00000347968 DHX57Q6P158 1386 aaKnown RBP22.85■■□□□ 1.25
MBD1-204ENST00000347968 TNIKQ9UKE5 1360 aa22.84■■□□□ 1.25
MBD1-204ENST00000347968 PAK3O75914 559 aaPredicted RBP22.83■■□□□ 1.24
MBD1-204ENST00000347968 MYT1LQ9UL68 1186 aa22.77■■□□□ 1.24
MBD1-204ENST00000347968 DNAJC5BQ9UF47 199 aa22.73■■□□□ 1.23
MBD1-204ENST00000347968 CFTRP13569 1480 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms