Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
LIMK1P53667 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
LIMK1P53667 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 AL136982.4-201ENST00000437689 1740 ntBASIC15.51■□□□□ 0.07
LIMK1P53667 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
LIMK1P53667 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.5■□□□□ 0.07
LIMK1P53667 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
LIMK1P53667 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.5■□□□□ 0.07
LIMK1P53667 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.5■□□□□ 0.07
LIMK1P53667 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.5■□□□□ 0.07
LIMK1P53667 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC15.5■□□□□ 0.07
LIMK1P53667 AC006001.1-201ENST00000325130 474 ntBASIC15.5■□□□□ 0.07
LIMK1P53667 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
LIMK1P53667 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 ACKR1-201ENST00000368121 1240 ntBASIC15.5■□□□□ 0.07
LIMK1P53667 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
LIMK1P53667 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 FNTAP2-201ENST00000430308 634 ntBASIC15.5■□□□□ 0.07
LIMK1P53667 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.5■□□□□ 0.07
LIMK1P53667 REEP1-202ENST00000453231 940 ntTSL 2 BASIC15.5■□□□□ 0.07
LIMK1P53667 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
LIMK1P53667 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
LIMK1P53667 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
LIMK1P53667 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC15.5■□□□□ 0.07
LIMK1P53667 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.5■□□□□ 0.07
LIMK1P53667 SPCS2P2-201ENST00000603270 608 ntBASIC15.5■□□□□ 0.07
LIMK1P53667 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC15.5■□□□□ 0.07
LIMK1P53667 AC005695.3-201ENST00000614522 232 ntBASIC15.5■□□□□ 0.07
LIMK1P53667 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.5■□□□□ 0.07
LIMK1P53667 AC128714.1-201ENST00000637035 887 ntBASIC15.5■□□□□ 0.07
LIMK1P53667 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.5■□□□□ 0.07
LIMK1P53667 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.5■□□□□ 0.07
LIMK1P53667 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.5■□□□□ 0.07
LIMK1P53667 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
LIMK1P53667 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.5■□□□□ 0.07
LIMK1P53667 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.5■□□□□ 0.07
LIMK1P53667 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.5■□□□□ 0.07
LIMK1P53667 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIMK1P53667 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.49■□□□□ 0.07
LIMK1P53667 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.49■□□□□ 0.07
LIMK1P53667 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.49■□□□□ 0.07
LIMK1P53667 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.49■□□□□ 0.07
LIMK1P53667 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.49■□□□□ 0.07
LIMK1P53667 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
LIMK1P53667 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
LIMK1P53667 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
LIMK1P53667 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.49■□□□□ 0.07
LIMK1P53667 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC15.49■□□□□ 0.07
LIMK1P53667 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC15.49■□□□□ 0.07
LIMK1P53667 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LIMK1P53667 AC022137.2-201ENST00000503482 481 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms