RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 NISCHQ9Y2I1 1504 aa36.4■■■■□ 3.42
SAMM50-201ENST00000350028 CCDC180Q9P1Z9 1646 aa31.46■■■□□ 2.63
SAMM50-201ENST00000350028 ZCCHC6Q5VYS8 1495 aaKnown RBP30.68■■■□□ 2.5
SAMM50-201ENST00000350028 ABCC9O60706 1549 aa30.14■■■□□ 2.42
SAMM50-201ENST00000350028 SHROOM4Q9ULL8 1493 aa30.12■■■□□ 2.41
SAMM50-201ENST00000350028 DCAF1Q9Y4B6 1507 aa30.09■■■□□ 2.41
SAMM50-201ENST00000350028 DCAF8L2P0C7V8 631 aa29.94■■■□□ 2.38
SAMM50-201ENST00000350028 MYO15BQ96JP2 1530 aa29.52■■■□□ 2.32
SAMM50-201ENST00000350028 NACADO15069 1562 aa29.34■■■□□ 2.29
SAMM50-201ENST00000350028 SUPT5HO00267 1087 aaKnown RBP29.3■■■□□ 2.28
SAMM50-201ENST00000350028 RB1CC1Q8TDY2 1594 aa29.19■■■□□ 2.26
SAMM50-201ENST00000350028 SCRIBQ14160 1630 aa29.03■■■□□ 2.24
SAMM50-201ENST00000350028 UNC13AQ9UPW8 1703 aa28.71■■■□□ 2.19
SAMM50-201ENST00000350028 RSF1Q96T23 1441 aaPredicted RBP28.47■■■□□ 2.15
SAMM50-201ENST00000350028 BICRAQ9NZM4 1560 aa28.45■■■□□ 2.14
SAMM50-201ENST00000350028 CHIC1Q5VXU3 224 aa28.35■■■□□ 2.13
SAMM50-201ENST00000350028 PABPN1Q86U42 306 aaKnown RBP eCLIP28.33■■■□□ 2.13
SAMM50-201ENST00000350028 CECR2Q9BXF3 1484 aa28.25■■■□□ 2.11
SAMM50-201ENST00000350028 MROH2BQ7Z745 1585 aa28.15■■■□□ 2.1
SAMM50-201ENST00000350028 BAZ1AQ9NRL2 1556 aaPredicted RBP28.06■■■□□ 2.08
SAMM50-201ENST00000350028 WIZO95785 1651 aa27.96■■■□□ 2.07
SAMM50-201ENST00000350028 SMARCA4P51532 1647 aa27.85■■■□□ 2.05
SAMM50-201ENST00000350028 TOP2AP11388 1531 aaKnown RBP27.67■■■□□ 2.02
SAMM50-201ENST00000350028 EIF4G1Q04637 1599 aaKnown RBP27.57■■■□□ 2
SAMM50-201ENST00000350028 TRIM41Q8WV44 630 aa27.5■■□□□ 1.99
SAMM50-201ENST00000350028 PEG3Q9GZU2 1588 aa27.48■■□□□ 1.99
SAMM50-201ENST00000350028 SMARCA2P51531 1590 aa27.43■■□□□ 1.98
SAMM50-201ENST00000350028 CCDC88BA6NC98 1476 aa27.42■■□□□ 1.98
SAMM50-201ENST00000350028 LOC105371045A0A1W2PR82 267 aa27.29■■□□□ 1.96
SAMM50-201ENST00000350028 CC2D2AQ9P2K1 1620 aa27.29■■□□□ 1.96
SAMM50-201ENST00000350028 ATAD2BQ9ULI0 1458 aa27.28■■□□□ 1.96
SAMM50-201ENST00000350028 BAZ1BQ9UIG0 1483 aaKnown RBP27.15■■□□□ 1.94
SAMM50-201ENST00000350028 NCAPD3P42695 1498 aa27.12■■□□□ 1.93
SAMM50-201ENST00000350028 DNAJC5BQ9UF47 199 aa27.11■■□□□ 1.93
SAMM50-201ENST00000350028 HMGXB3Q12766 1538 aa27.02■■□□□ 1.92
SAMM50-201ENST00000350028 FAM9AQ8IZU1 332 aaPredicted RBP27.02■■□□□ 1.92
SAMM50-201ENST00000350028 ABCC8Q09428 1581 aa27■■□□□ 1.91
SAMM50-201ENST00000350028 WRNQ14191 1432 aaPredicted RBP eCLIP26.78■■□□□ 1.88
SAMM50-201ENST00000350028 EEA1Q15075 1411 aa26.72■■□□□ 1.87
SAMM50-201ENST00000350028 PCGF6Q9BYE7 350 aa26.65■■□□□ 1.86
SAMM50-201ENST00000350028 SYNJ1O43426 1573 aa26.63■■□□□ 1.85
SAMM50-201ENST00000350028 SOGA1O94964 1423 aa26.63■■□□□ 1.85
SAMM50-201ENST00000350028 EHMT2Q96KQ7 1210 aa26.61■■□□□ 1.85
SAMM50-201ENST00000350028 CSRNP3Q8WYN3 585 aa26.54■■□□□ 1.84
SAMM50-201ENST00000350028 TRIM26Q12899 539 aaPredicted RBP26.52■■□□□ 1.84
SAMM50-201ENST00000350028 RUSC2Q8N2Y8 1516 aa26.5■■□□□ 1.83
SAMM50-201ENST00000350028 CFTRP13569 1480 aa26.49■■□□□ 1.83
SAMM50-201ENST00000350028 TOP2BQ02880 1626 aa26.49■■□□□ 1.83
SAMM50-201ENST00000350028 BIVM-ERCC5R4GMW8 1640 aa26.45■■□□□ 1.82
SAMM50-201ENST00000350028 TNIKQ9UKE5 1360 aa26.41■■□□□ 1.82
SAMM50-201ENST00000350028 PRDM2Q13029 1718 aa26.39■■□□□ 1.81
SAMM50-201ENST00000350028 GOLGA3Q08378 1498 aa26.37■■□□□ 1.81
SAMM50-201ENST00000350028 CADPSQ9ULU8 1353 aa26.37■■□□□ 1.81
SAMM50-201ENST00000350028 HRCP23327 699 aa26.36■■□□□ 1.81
SAMM50-201ENST00000350028 NESP48681 1621 aa26.36■■□□□ 1.81
SAMM50-201ENST00000350028 KIF21BO75037 1637 aa26.32■■□□□ 1.8
SAMM50-201ENST00000350028 CEP164Q9UPV0 1460 aa26.31■■□□□ 1.8
SAMM50-201ENST00000350028 CEP162Q5TB80 1403 aa26.29■■□□□ 1.8
SAMM50-201ENST00000350028 CUX1P39880 1505 aa26.28■■□□□ 1.8
SAMM50-201ENST00000350028 UBTFP17480 764 aaKnown RBP26.26■■□□□ 1.79
SAMM50-201ENST00000350028 LAMC3Q9Y6N6 1575 aa26.24■■□□□ 1.79
SAMM50-201ENST00000350028 FANCD2Q9BXW9 1451 aa26.07■■□□□ 1.76
SAMM50-201ENST00000350028 KIF27Q86VH2 1401 aa26.06■■□□□ 1.76
SAMM50-201ENST00000350028 RAPGEF2Q9Y4G8 1499 aa26.06■■□□□ 1.76
SAMM50-201ENST00000350028 ERICH3Q5RHP9 1530 aa26.04■■□□□ 1.76
SAMM50-201ENST00000350028 KIF21AQ7Z4S6 1674 aa26.03■■□□□ 1.76
SAMM50-201ENST00000350028 PRXQ9BXM0 1461 aa26.02■■□□□ 1.76
SAMM50-201ENST00000350028 PDS5BQ9NTI5 1447 aa26.01■■□□□ 1.75
SAMM50-201ENST00000350028 CLIP1P30622 1438 aa25.97■■□□□ 1.75
SAMM50-201ENST00000350028 PPARGC1BQ86YN6 1023 aaKnown RBP25.95■■□□□ 1.74
SAMM50-201ENST00000350028 FGD5Q6ZNL6 1462 aa25.91■■□□□ 1.74
SAMM50-201ENST00000350028 DNMBPQ6XZF7 1577 aa25.87■■□□□ 1.73
SAMM50-201ENST00000350028 CUX2O14529 1486 aa25.86■■□□□ 1.73
SAMM50-201ENST00000350028 URB2Q14146 1524 aaKnown RBP25.83■■□□□ 1.73
SAMM50-201ENST00000350028 VPS8Q8N3P4 1428 aa25.82■■□□□ 1.72
SAMM50-201ENST00000350028 ERCC6Q03468 1493 aa25.81■■□□□ 1.72
SAMM50-201ENST00000350028 ZEB1P37275 1124 aaPredicted RBP25.8■■□□□ 1.72
SAMM50-201ENST00000350028 TOPBP1Q92547 1522 aa25.79■■□□□ 1.72
SAMM50-201ENST00000350028 IGF1RP08069 1367 aa25.78■■□□□ 1.72
SAMM50-201ENST00000350028 MRC2Q9UBG0 1479 aa25.75■■□□□ 1.71
SAMM50-201ENST00000350028 THOC2Q8NI27 1593 aaKnown RBP25.73■■□□□ 1.71
SAMM50-201ENST00000350028 ABCA10Q8WWZ4 1543 aa25.69■■□□□ 1.7
SAMM50-201ENST00000350028 POLA1P09884 1462 aaPredicted RBP25.69■■□□□ 1.7
SAMM50-201ENST00000350028 WDR62O43379 1518 aa25.67■■□□□ 1.7
SAMM50-201ENST00000350028 CARMIL1Q5VZK9 1371 aa25.67■■□□□ 1.7
SAMM50-201ENST00000350028 RANGAP1P46060 587 aaPredicted RBP25.64■■□□□ 1.7
SAMM50-201ENST00000350028 APLP2Q06481 763 aa25.63■■□□□ 1.69
SAMM50-201ENST00000350028 ARAP1Q96P48 1450 aa25.63■■□□□ 1.69
SAMM50-201ENST00000350028 RAD54L2Q9Y4B4 1467 aa25.63■■□□□ 1.69
SAMM50-201ENST00000350028 TTBK1Q5TCY1 1321 aaPredicted RBP25.62■■□□□ 1.69
SAMM50-201ENST00000350028 WDR97A6NE52 1622 aa25.53■■□□□ 1.68
SAMM50-201ENST00000350028 ARHGAP35Q9NRY4 1499 aa25.52■■□□□ 1.68
SAMM50-201ENST00000350028 CUL7Q14999 1698 aa25.51■■□□□ 1.68
SAMM50-201ENST00000350028 TARBP1Q13395 1621 aaKnown RBP25.46■■□□□ 1.67
SAMM50-201ENST00000350028 ABCA5Q8WWZ7 1642 aa25.42■■□□□ 1.66
SAMM50-201ENST00000350028 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.38■■□□□ 1.65
SAMM50-201ENST00000350028 CCER1Q8TC90 406 aaPredicted RBP25.37■■□□□ 1.65
SAMM50-201ENST00000350028 GAPVD1Q14C86 1478 aa25.36■■□□□ 1.65
SAMM50-201ENST00000350028 IFT140Q96RY7 1462 aa25.34■■□□□ 1.65
SAMM50-201ENST00000350028 TDRD9Q8NDG6 1382 aaKnown RBP25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms