RNA–Protein interactions for RNA: ENST00000433541.1

TREX1-201, Transcript of three prime repair exonuclease 1, humanhuman

TSL 1 (best) BASIC

Gene TREX1, Length 1,105 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1-201ENST00000433541 NISCHQ9Y2I1 1504 aa37.16■■■■□ 3.54
TREX1-201ENST00000433541 CCDC180Q9P1Z9 1646 aa33.05■■■□□ 2.88
TREX1-201ENST00000433541 ABCC9O60706 1549 aa32.2■■■□□ 2.74
TREX1-201ENST00000433541 DCAF8L2P0C7V8 631 aa31.18■■■□□ 2.58
TREX1-201ENST00000433541 RB1CC1Q8TDY2 1594 aa31.04■■■□□ 2.56
TREX1-201ENST00000433541 ZCCHC6Q5VYS8 1495 aaKnown RBP30.99■■■□□ 2.55
TREX1-201ENST00000433541 NACADO15069 1562 aa30.98■■■□□ 2.55
TREX1-201ENST00000433541 MYO15BQ96JP2 1530 aa30.75■■■□□ 2.51
TREX1-201ENST00000433541 DCAF1Q9Y4B6 1507 aa30.7■■■□□ 2.51
TREX1-201ENST00000433541 UNC13AQ9UPW8 1703 aa30.39■■■□□ 2.46
TREX1-201ENST00000433541 SCRIBQ14160 1630 aa30.24■■■□□ 2.43
TREX1-201ENST00000433541 PABPN1Q86U42 306 aaKnown RBP eCLIP30.09■■■□□ 2.41
TREX1-201ENST00000433541 BICRAQ9NZM4 1560 aa29.99■■■□□ 2.39
TREX1-201ENST00000433541 SHROOM4Q9ULL8 1493 aa29.68■■■□□ 2.34
TREX1-201ENST00000433541 DNAJC5BQ9UF47 199 aa29.25■■■□□ 2.27
TREX1-201ENST00000433541 EIF4G1Q04637 1599 aaKnown RBP29.25■■■□□ 2.27
TREX1-201ENST00000433541 CC2D2AQ9P2K1 1620 aa29.12■■■□□ 2.25
TREX1-201ENST00000433541 CECR2Q9BXF3 1484 aa28.93■■■□□ 2.22
TREX1-201ENST00000433541 SMARCA4P51532 1647 aa28.87■■■□□ 2.21
TREX1-201ENST00000433541 BAZ1AQ9NRL2 1556 aaPredicted RBP28.85■■■□□ 2.21
TREX1-201ENST00000433541 MROH2BQ7Z745 1585 aa28.67■■■□□ 2.18
TREX1-201ENST00000433541 SMARCA2P51531 1590 aa28.63■■■□□ 2.17
TREX1-201ENST00000433541 ATAD2BQ9ULI0 1458 aa28.59■■■□□ 2.17
TREX1-201ENST00000433541 NCAPD3P42695 1498 aa28.51■■■□□ 2.15
TREX1-201ENST00000433541 PEG3Q9GZU2 1588 aa28.48■■■□□ 2.15
TREX1-201ENST00000433541 BAZ1BQ9UIG0 1483 aaKnown RBP28.46■■■□□ 2.15
TREX1-201ENST00000433541 HMGXB3Q12766 1538 aa28.46■■■□□ 2.15
TREX1-201ENST00000433541 WIZO95785 1651 aa28.45■■■□□ 2.14
TREX1-201ENST00000433541 RSF1Q96T23 1441 aaPredicted RBP28.35■■■□□ 2.13
TREX1-201ENST00000433541 TOP2AP11388 1531 aaKnown RBP28.1■■■□□ 2.09
TREX1-201ENST00000433541 SUPT5HO00267 1087 aaKnown RBP27.94■■■□□ 2.06
TREX1-201ENST00000433541 NESP48681 1621 aa27.88■■■□□ 2.05
TREX1-201ENST00000433541 LAMC3Q9Y6N6 1575 aa27.84■■■□□ 2.05
TREX1-201ENST00000433541 ERCC6Q03468 1493 aa27.81■■■□□ 2.04
TREX1-201ENST00000433541 CCDC88BA6NC98 1476 aa27.74■■■□□ 2.03
TREX1-201ENST00000433541 CADPSQ9ULU8 1353 aa27.73■■■□□ 2.03
TREX1-201ENST00000433541 KIF21AQ7Z4S6 1674 aa27.64■■■□□ 2.02
TREX1-201ENST00000433541 PDS5BQ9NTI5 1447 aa27.64■■■□□ 2.02
TREX1-201ENST00000433541 PRDM2Q13029 1718 aa27.58■■■□□ 2.01
TREX1-201ENST00000433541 CFTRP13569 1480 aa27.58■■■□□ 2.01
TREX1-201ENST00000433541 FANCD2Q9BXW9 1451 aa27.48■■□□□ 1.99
TREX1-201ENST00000433541 CEP164Q9UPV0 1460 aa27.46■■□□□ 1.99
TREX1-201ENST00000433541 THOC2Q8NI27 1593 aaKnown RBP27.42■■□□□ 1.98
TREX1-201ENST00000433541 MRC2Q9UBG0 1479 aa27.35■■□□□ 1.97
TREX1-201ENST00000433541 CUX2O14529 1486 aa27.33■■□□□ 1.97
TREX1-201ENST00000433541 WDR62O43379 1518 aa27.22■■□□□ 1.95
TREX1-201ENST00000433541 URB2Q14146 1524 aaKnown RBP27.16■■□□□ 1.94
TREX1-201ENST00000433541 DNMBPQ6XZF7 1577 aa27.05■■□□□ 1.92
TREX1-201ENST00000433541 ABCC8Q09428 1581 aa27.05■■□□□ 1.92
TREX1-201ENST00000433541 TOPBP1Q92547 1522 aa27.04■■□□□ 1.92
TREX1-201ENST00000433541 CUX1P39880 1505 aa26.89■■□□□ 1.89
TREX1-201ENST00000433541 IFT140Q96RY7 1462 aa26.83■■□□□ 1.89
TREX1-201ENST00000433541 POLA1P09884 1462 aaPredicted RBP26.81■■□□□ 1.88
TREX1-201ENST00000433541 WRNQ14191 1432 aaPredicted RBP eCLIP26.81■■□□□ 1.88
TREX1-201ENST00000433541 FGD5Q6ZNL6 1462 aa26.81■■□□□ 1.88
TREX1-201ENST00000433541 BIVM-ERCC5R4GMW8 1640 aa26.74■■□□□ 1.87
TREX1-201ENST00000433541 SYNJ1O43426 1573 aa26.74■■□□□ 1.87
TREX1-201ENST00000433541 TOP2BQ02880 1626 aa26.73■■□□□ 1.87
TREX1-201ENST00000433541 SOGA1O94964 1423 aa26.73■■□□□ 1.87
TREX1-201ENST00000433541 TARBP1Q13395 1621 aaKnown RBP26.72■■□□□ 1.87
TREX1-201ENST00000433541 RAD54L2Q9Y4B4 1467 aa26.71■■□□□ 1.87
TREX1-201ENST00000433541 ZNF608Q9ULD9 1512 aaPredicted RBP26.69■■□□□ 1.86
TREX1-201ENST00000433541 EIF4G3O43432 1585 aaKnown RBP26.66■■□□□ 1.86
TREX1-201ENST00000433541 WDR97A6NE52 1622 aa26.58■■□□□ 1.85
TREX1-201ENST00000433541 AQRO60306 1485 aaKnown RBP eCLIP26.57■■□□□ 1.84
TREX1-201ENST00000433541 TDRD9Q8NDG6 1382 aaKnown RBP26.56■■□□□ 1.84
TREX1-201ENST00000433541 ABCA10Q8WWZ4 1543 aa26.5■■□□□ 1.83
TREX1-201ENST00000433541 PBRM1Q86U86 1689 aa26.47■■□□□ 1.83
TREX1-201ENST00000433541 GAPVD1Q14C86 1478 aa26.43■■□□□ 1.82
TREX1-201ENST00000433541 ABCA5Q8WWZ7 1642 aa26.43■■□□□ 1.82
TREX1-201ENST00000433541 GRIN2BQ13224 1484 aa26.39■■□□□ 1.82
TREX1-201ENST00000433541 SNAPC4Q5SXM2 1469 aa26.36■■□□□ 1.81
TREX1-201ENST00000433541 CHD1O14646 1710 aa26.35■■□□□ 1.81
TREX1-201ENST00000433541 FBLN2P98095 1184 aa26.35■■□□□ 1.81
TREX1-201ENST00000433541 TRIM41Q8WV44 630 aa26.35■■□□□ 1.81
TREX1-201ENST00000433541 MAGI1Q96QZ7 1491 aaPredicted RBP26.3■■□□□ 1.8
TREX1-201ENST00000433541 OSCARQ8IYS5 282 aa26.25■■□□□ 1.79
TREX1-201ENST00000433541 KIF27Q86VH2 1401 aa26.24■■□□□ 1.79
TREX1-201ENST00000433541 DNAJC5Q9H3Z4 198 aa26.24■■□□□ 1.79
TREX1-201ENST00000433541 CHMP7Q8WUX9 453 aaPredicted RBP26.23■■□□□ 1.79
TREX1-201ENST00000433541 ERICH3Q5RHP9 1530 aa26.22■■□□□ 1.79
TREX1-201ENST00000433541 SYNJ2O15056 1496 aa26.2■■□□□ 1.78
TREX1-201ENST00000433541 ADAMTS12P58397 1594 aa26.18■■□□□ 1.78
TREX1-201ENST00000433541 FHAD1B1AJZ9 1412 aa26.11■■□□□ 1.77
TREX1-201ENST00000433541 CUL7Q14999 1698 aa26.09■■□□□ 1.77
TREX1-201ENST00000433541 GRIN2AQ12879 1464 aa26.06■■□□□ 1.76
TREX1-201ENST00000433541 CHIC1Q5VXU3 224 aa26.04■■□□□ 1.76
TREX1-201ENST00000433541 IGF1RP08069 1367 aa26.02■■□□□ 1.76
TREX1-201ENST00000433541 RUSC2Q8N2Y8 1516 aa26.02■■□□□ 1.76
TREX1-201ENST00000433541 CARMIL1Q5VZK9 1371 aa25.94■■□□□ 1.74
TREX1-201ENST00000433541 CEP170Q5SW79 1584 aa25.93■■□□□ 1.74
TREX1-201ENST00000433541 CLASP1Q7Z460 1538 aa25.93■■□□□ 1.74
TREX1-201ENST00000433541 NUP160Q12769 1436 aa25.87■■□□□ 1.73
TREX1-201ENST00000433541 RIMBP3CA6NJZ7 1639 aa25.86■■□□□ 1.73
TREX1-201ENST00000433541 RIMBP3BA6NNM3 1639 aa25.86■■□□□ 1.73
TREX1-201ENST00000433541 RIMBP3Q9UFD9 1639 aa25.86■■□□□ 1.73
TREX1-201ENST00000433541 FAM9AQ8IZU1 332 aaPredicted RBP25.86■■□□□ 1.73
TREX1-201ENST00000433541 ARHGEF11O15085 1522 aa25.83■■□□□ 1.73
TREX1-201ENST00000433541 EEA1Q15075 1411 aa25.83■■□□□ 1.73
TREX1-201ENST00000433541 RAPGEF2Q9Y4G8 1499 aa25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms