RNA–Protein interactions for RNA: ENST00000289272.2

PCDHA13-201, Transcript of protocadherin alpha 13, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PCDHA13, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA13-201ENST00000289272 NISCHQ9Y2I1 1504 aa30.22■■■□□ 2.43
PCDHA13-201ENST00000289272 DCAF8L2P0C7V8 631 aa29.67■■■□□ 2.34
PCDHA13-201ENST00000289272 SUPT5HO00267 1087 aaKnown RBP28.61■■■□□ 2.17
PCDHA13-201ENST00000289272 SHROOM4Q9ULL8 1493 aa28.31■■■□□ 2.12
PCDHA13-201ENST00000289272 PELP1Q8IZL8 1130 aaKnown RBP28.12■■■□□ 2.09
PCDHA13-201ENST00000289272 MYT1Q01538 1121 aa27.98■■■□□ 2.07
PCDHA13-201ENST00000289272 ZEB1P37275 1124 aaPredicted RBP27.43■■□□□ 1.98
PCDHA13-201ENST00000289272 CENPBP07199 599 aaPredicted RBP27.23■■□□□ 1.95
PCDHA13-201ENST00000289272 EHMT2Q96KQ7 1210 aa27.16■■□□□ 1.94
PCDHA13-201ENST00000289272 PCGF6Q9BYE7 350 aa26.99■■□□□ 1.91
PCDHA13-201ENST00000289272 APLP2Q06481 763 aa26.84■■□□□ 1.89
PCDHA13-201ENST00000289272 FAM9AQ8IZU1 332 aaPredicted RBP26.81■■□□□ 1.88
PCDHA13-201ENST00000289272 CCER1Q8TC90 406 aaPredicted RBP26.74■■□□□ 1.87
PCDHA13-201ENST00000289272 HRCP23327 699 aa26.61■■□□□ 1.85
PCDHA13-201ENST00000289272 TRIM41Q8WV44 630 aa26.6■■□□□ 1.85
PCDHA13-201ENST00000289272 ERICH6Q7L0X2 663 aa26.55■■□□□ 1.84
PCDHA13-201ENST00000289272 TTBK1Q5TCY1 1321 aaPredicted RBP26.3■■□□□ 1.8
PCDHA13-201ENST00000289272 TRIM26Q12899 539 aaPredicted RBP26.27■■□□□ 1.8
PCDHA13-201ENST00000289272 NEFLP07196 543 aa26.12■■□□□ 1.77
PCDHA13-201ENST00000289272 CHIC1Q5VXU3 224 aa26.1■■□□□ 1.77
PCDHA13-201ENST00000289272 UBTFP17480 764 aaKnown RBP26.01■■□□□ 1.75
PCDHA13-201ENST00000289272 RANGAP1P46060 587 aaPredicted RBP25.95■■□□□ 1.74
PCDHA13-201ENST00000289272 LOC105371045A0A1W2PR82 267 aa25.8■■□□□ 1.72
PCDHA13-201ENST00000289272 YTHDC1Q96MU7 727 aaKnown RBP25.7■■□□□ 1.7
PCDHA13-201ENST00000289272 PPARGC1BQ86YN6 1023 aaKnown RBP25.7■■□□□ 1.7
PCDHA13-201ENST00000289272 ATP1B4Q9UN42 357 aaPredicted RBP25.69■■□□□ 1.7
PCDHA13-201ENST00000289272 ABCC9O60706 1549 aa25.35■■□□□ 1.65
PCDHA13-201ENST00000289272 DIEXFQ68CQ4 756 aaKnown RBP25.35■■□□□ 1.65
PCDHA13-201ENST00000289272 CLSPNQ9HAW4 1339 aa25.2■■□□□ 1.62
PCDHA13-201ENST00000289272 ZCCHC6Q5VYS8 1495 aaKnown RBP25.18■■□□□ 1.62
PCDHA13-201ENST00000289272 DAXXQ9UER7 740 aaPredicted RBP25.15■■□□□ 1.62
PCDHA13-201ENST00000289272 HNRNPUL2Q1KMD3 747 aaKnown RBP25.13■■□□□ 1.61
PCDHA13-201ENST00000289272 GTF3C3Q9Y5Q9 886 aa25.12■■□□□ 1.61
PCDHA13-201ENST00000289272 RTL5Q5HYW3 569 aaPredicted RBP25.09■■□□□ 1.61
PCDHA13-201ENST00000289272 ACIN1Q9UKV3 1341 aaKnown RBP25.09■■□□□ 1.61
PCDHA13-201ENST00000289272 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.05■■□□□ 1.6
PCDHA13-201ENST00000289272 ITGAEP38570 1179 aa25.03■■□□□ 1.6
PCDHA13-201ENST00000289272 PABPN1Q86U42 306 aaKnown RBP eCLIP24.95■■□□□ 1.58
PCDHA13-201ENST00000289272 CCDC180Q9P1Z9 1646 aa24.91■■□□□ 1.58
PCDHA13-201ENST00000289272 DCAF1Q9Y4B6 1507 aa24.89■■□□□ 1.57
PCDHA13-201ENST00000289272 MYT1LQ9UL68 1186 aa24.83■■□□□ 1.57
PCDHA13-201ENST00000289272 ZNF316A6NFI3 1004 aaPredicted RBP24.81■■□□□ 1.56
PCDHA13-201ENST00000289272 CDK11AQ9UQ88 783 aaPredicted RBP24.71■■□□□ 1.55
PCDHA13-201ENST00000289272 SCRIBQ14160 1630 aa24.69■■□□□ 1.54
PCDHA13-201ENST00000289272 CSRNP3Q8WYN3 585 aa24.61■■□□□ 1.53
PCDHA13-201ENST00000289272 FAM50AQ14320 339 aaKnown RBP24.54■■□□□ 1.52
PCDHA13-201ENST00000289272 ANP32CO43423 234 aa24.48■■□□□ 1.51
PCDHA13-201ENST00000289272 POLR3GLQ9BT43 218 aa24.46■■□□□ 1.51
PCDHA13-201ENST00000289272 SCAF1Q9H7N4 1312 aaKnown RBP24.34■■□□□ 1.49
PCDHA13-201ENST00000289272 NEUROD1Q13562 356 aa24.32■■□□□ 1.48
PCDHA13-201ENST00000289272 MYO15BQ96JP2 1530 aa24.32■■□□□ 1.48
PCDHA13-201ENST00000289272 ANP32AP39687 249 aaKnown RBP24.31■■□□□ 1.48
PCDHA13-201ENST00000289272 BCANQ96GW7 911 aa24.29■■□□□ 1.48
PCDHA13-201ENST00000289272 TRIM52Q96A61 297 aa24.25■■□□□ 1.47
PCDHA13-201ENST00000289272 RSF1Q96T23 1441 aaPredicted RBP24.22■■□□□ 1.47
PCDHA13-201ENST00000289272 CNGB1Q14028 1251 aaPredicted RBP24.2■■□□□ 1.47
PCDHA13-201ENST00000289272 RB1CC1Q8TDY2 1594 aa24.19■■□□□ 1.46
PCDHA13-201ENST00000289272 FBLN2P98095 1184 aa24.18■■□□□ 1.46
PCDHA13-201ENST00000289272 GLIPR1L2Q4G1C9 344 aa24.17■■□□□ 1.46
PCDHA13-201ENST00000289272 P3H3Q8IVL6 736 aa24.06■■□□□ 1.44
PCDHA13-201ENST00000289272 NACADO15069 1562 aa24.02■■□□□ 1.44
PCDHA13-201ENST00000289272 FKBP8Q14318 412 aa24■■□□□ 1.43
PCDHA13-201ENST00000289272 SLC4A1APQ9BWU0 796 aaKnown RBP24■■□□□ 1.43
PCDHA13-201ENST00000289272 ANP32EQ9BTT0 268 aa23.99■■□□□ 1.43
PCDHA13-201ENST00000289272 EEA1Q15075 1411 aa23.93■■□□□ 1.42
PCDHA13-201ENST00000289272 CLIP1P30622 1438 aa23.86■■□□□ 1.41
PCDHA13-201ENST00000289272 ZNF326Q5BKZ1 582 aaKnown RBP23.86■■□□□ 1.41
PCDHA13-201ENST00000289272 CEP162Q5TB80 1403 aa23.82■■□□□ 1.4
PCDHA13-201ENST00000289272 GOLGA3Q08378 1498 aa23.81■■□□□ 1.4
PCDHA13-201ENST00000289272 ZBTB47Q9UFB7 747 aaPredicted RBP23.77■■□□□ 1.4
PCDHA13-201ENST00000289272 EIF5BO60841 1220 aaKnown RBP23.75■■□□□ 1.39
PCDHA13-201ENST00000289272 TONSLQ96HA7 1378 aa23.74■■□□□ 1.39
PCDHA13-201ENST00000289272 ARID3CA6NKF2 412 aa23.74■■□□□ 1.39
PCDHA13-201ENST00000289272 ANP32BQ92688 251 aaKnown RBP23.73■■□□□ 1.39
PCDHA13-201ENST00000289272 WRNQ14191 1432 aaPredicted RBP eCLIP23.72■■□□□ 1.39
PCDHA13-201ENST00000289272 TNIKQ9UKE5 1360 aa23.71■■□□□ 1.39
PCDHA13-201ENST00000289272 NPM1P06748 294 aaKnown RBP eCLIP23.7■■□□□ 1.38
PCDHA13-201ENST00000289272 BAZ1AQ9NRL2 1556 aaPredicted RBP23.68■■□□□ 1.38
PCDHA13-201ENST00000289272 MIER1Q8N108 512 aa23.67■■□□□ 1.38
PCDHA13-201ENST00000289272 ZNF777Q9ULD5 760 aaPredicted RBP23.65■■□□□ 1.38
PCDHA13-201ENST00000289272 CECR2Q9BXF3 1484 aa23.63■■□□□ 1.37
PCDHA13-201ENST00000289272 HNRNPUQ00839 825 aaKnown RBP eCLIP23.63■■□□□ 1.37
PCDHA13-201ENST00000289272 DDX10Q13206 875 aaKnown RBP23.61■■□□□ 1.37
PCDHA13-201ENST00000289272 CEP164Q9UPV0 1460 aa23.59■■□□□ 1.37
PCDHA13-201ENST00000289272 UPF2Q9HAU5 1272 aaKnown RBP23.58■■□□□ 1.37
PCDHA13-201ENST00000289272 BAZ1BQ9UIG0 1483 aaKnown RBP23.57■■□□□ 1.36
PCDHA13-201ENST00000289272 NPM2Q86SE8 214 aaKnown RBP23.57■■□□□ 1.36
PCDHA13-201ENST00000289272 ESF1Q9H501 851 aaKnown RBP23.57■■□□□ 1.36
PCDHA13-201ENST00000289272 DDRGK1Q96HY6 314 aa23.57■■□□□ 1.36
PCDHA13-201ENST00000289272 CANXP27824 592 aaKnown RBP23.56■■□□□ 1.36
PCDHA13-201ENST00000289272 CCDC136Q96JN2 1154 aa23.54■■□□□ 1.36
PCDHA13-201ENST00000289272 NEFMP07197 916 aa23.53■■□□□ 1.36
PCDHA13-201ENST00000289272 MTUS2Q5JR59 1369 aa23.5■■□□□ 1.35
PCDHA13-201ENST00000289272 CHMP7Q8WUX9 453 aaPredicted RBP23.49■■□□□ 1.35
PCDHA13-201ENST00000289272 NBR1Q14596 966 aa23.46■■□□□ 1.35
PCDHA13-201ENST00000289272 KIF27Q86VH2 1401 aa23.45■■□□□ 1.34
PCDHA13-201ENST00000289272 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.45■■□□□ 1.34
PCDHA13-201ENST00000289272 PPM1GO15355 546 aaPredicted RBP23.43■■□□□ 1.34
PCDHA13-201ENST00000289272 CHIC2Q9UKJ5 165 aa23.43■■□□□ 1.34
PCDHA13-201ENST00000289272 BCL11AQ9H165 835 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms