Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COPAP53621 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COPAP53621 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPAP53621 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.3■□□□□ 0.2
COPAP53621 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.3■□□□□ 0.2
COPAP53621 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPAP53621 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COPAP53621 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COPAP53621 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.3■□□□□ 0.2
COPAP53621 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPAP53621 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPAP53621 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COPAP53621 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 AC073347.1-201ENST00000421633 2643 ntBASIC16.29■□□□□ 0.2
COPAP53621 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
COPAP53621 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 MEIS3P1-201ENST00000495167 958 ntBASIC16.29■□□□□ 0.2
COPAP53621 SDHAP3-202ENST00000515467 728 ntBASIC16.29■□□□□ 0.2
COPAP53621 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.29■□□□□ 0.2
COPAP53621 MIR4321-201ENST00000592276 80 ntBASIC16.29■□□□□ 0.2
COPAP53621 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.29■□□□□ 0.2
COPAP53621 AC004461.2-201ENST00000629517 803 ntBASIC16.29■□□□□ 0.2
COPAP53621 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 AC099063.4-201ENST00000641099 1602 ntBASIC16.29■□□□□ 0.2
COPAP53621 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.29■□□□□ 0.2
COPAP53621 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.29■□□□□ 0.2
COPAP53621 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COPAP53621 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPAP53621 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPAP53621 AL391825.1-201ENST00000457671 1364 ntBASIC16.28■□□□□ 0.2
COPAP53621 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
COPAP53621 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.28■□□□□ 0.2
COPAP53621 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPAP53621 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.28■□□□□ 0.2
COPAP53621 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.28■□□□□ 0.2
COPAP53621 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
COPAP53621 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPAP53621 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPAP53621 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.28■□□□□ 0.2
COPAP53621 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPAP53621 DGCR5-201ENST00000399539 862 ntBASIC16.28■□□□□ 0.2
COPAP53621 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPAP53621 AC093004.1-201ENST00000508850 424 ntBASIC16.28■□□□□ 0.2
COPAP53621 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
COPAP53621 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.28■□□□□ 0.2
COPAP53621 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
COPAP53621 SRD5A3P1-201ENST00000603021 949 ntBASIC16.28■□□□□ 0.2
COPAP53621 CHCHD2P3-201ENST00000603038 451 ntBASIC16.28■□□□□ 0.2
COPAP53621 MIR6069-201ENST00000620069 79 ntBASIC16.28■□□□□ 0.2
COPAP53621 AL109936.8-201ENST00000641772 604 ntBASIC16.28■□□□□ 0.2
COPAP53621 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPAP53621 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COPAP53621 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COPAP53621 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms