Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.32■□□□□ 0.52
CDKL5O76039 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CDKL5O76039 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
CDKL5O76039 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CDKL5O76039 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.31■□□□□ 0.52
CDKL5O76039 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.31■□□□□ 0.52
CDKL5O76039 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.31■□□□□ 0.52
CDKL5O76039 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
CDKL5O76039 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CDKL5O76039 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.31■□□□□ 0.52
CDKL5O76039 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.31■□□□□ 0.52
CDKL5O76039 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.31■□□□□ 0.52
CDKL5O76039 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.31■□□□□ 0.52
CDKL5O76039 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.31■□□□□ 0.52
CDKL5O76039 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.31■□□□□ 0.52
CDKL5O76039 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.31■□□□□ 0.52
CDKL5O76039 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.31■□□□□ 0.52
CDKL5O76039 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.31■□□□□ 0.52
CDKL5O76039 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.31■□□□□ 0.52
CDKL5O76039 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.31■□□□□ 0.52
CDKL5O76039 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.31■□□□□ 0.52
CDKL5O76039 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.31■□□□□ 0.52
CDKL5O76039 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.31■□□□□ 0.52
CDKL5O76039 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDKL5O76039 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CDKL5O76039 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.3■□□□□ 0.52
CDKL5O76039 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CDKL5O76039 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.3■□□□□ 0.52
CDKL5O76039 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.3■□□□□ 0.52
CDKL5O76039 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.3■□□□□ 0.52
CDKL5O76039 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.3■□□□□ 0.52
CDKL5O76039 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.3■□□□□ 0.52
CDKL5O76039 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 AL512361.1-201ENST00000554200 418 ntBASIC18.3■□□□□ 0.52
CDKL5O76039 AC010336.2-201ENST00000564226 506 ntBASIC18.3■□□□□ 0.52
CDKL5O76039 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.3■□□□□ 0.52
CDKL5O76039 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.3■□□□□ 0.52
CDKL5O76039 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.3■□□□□ 0.52
CDKL5O76039 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CDKL5O76039 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.3■□□□□ 0.52
CDKL5O76039 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
CDKL5O76039 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CDKL5O76039 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
CDKL5O76039 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.3■□□□□ 0.52
CDKL5O76039 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.3■□□□□ 0.52
CDKL5O76039 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.3■□□□□ 0.52
CDKL5O76039 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDKL5O76039 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CDKL5O76039 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CDKL5O76039 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.29■□□□□ 0.52
CDKL5O76039 AC087499.5-201ENST00000452760 1342 ntBASIC18.29■□□□□ 0.52
CDKL5O76039 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CDKL5O76039 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CDKL5O76039 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.29■□□□□ 0.52
CDKL5O76039 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDKL5O76039 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
CDKL5O76039 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms