Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.52■■□□□ 1.04
DEPDC4Q8N2C3 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
DEPDC4Q8N2C3 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
DEPDC4Q8N2C3 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
DEPDC4Q8N2C3 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
DEPDC4Q8N2C3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.52■■□□□ 1.04
DEPDC4Q8N2C3 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
DEPDC4Q8N2C3 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.52■■□□□ 1.04
DEPDC4Q8N2C3 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
DEPDC4Q8N2C3 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
DEPDC4Q8N2C3 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.51■■□□□ 1.03
DEPDC4Q8N2C3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
DEPDC4Q8N2C3 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.51■■□□□ 1.03
DEPDC4Q8N2C3 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
DEPDC4Q8N2C3 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
DEPDC4Q8N2C3 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.51■■□□□ 1.03
DEPDC4Q8N2C3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.51■■□□□ 1.03
DEPDC4Q8N2C3 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.51■■□□□ 1.03
DEPDC4Q8N2C3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
DEPDC4Q8N2C3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DEPDC4Q8N2C3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DEPDC4Q8N2C3 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DEPDC4Q8N2C3 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
DEPDC4Q8N2C3 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.5■■□□□ 1.03
DEPDC4Q8N2C3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DEPDC4Q8N2C3 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DEPDC4Q8N2C3 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.5■■□□□ 1.03
DEPDC4Q8N2C3 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DEPDC4Q8N2C3 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DEPDC4Q8N2C3 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DEPDC4Q8N2C3 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DEPDC4Q8N2C3 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
DEPDC4Q8N2C3 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.48■■□□□ 1.03
DEPDC4Q8N2C3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.48■■□□□ 1.03
DEPDC4Q8N2C3 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.48■■□□□ 1.03
DEPDC4Q8N2C3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.48■■□□□ 1.03
DEPDC4Q8N2C3 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
DEPDC4Q8N2C3 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.48■■□□□ 1.03
DEPDC4Q8N2C3 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.47■■□□□ 1.03
DEPDC4Q8N2C3 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.47■■□□□ 1.03
DEPDC4Q8N2C3 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.47■■□□□ 1.03
DEPDC4Q8N2C3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
DEPDC4Q8N2C3 SMPD5-203ENST00000639008 1464 ntBASIC21.47■■□□□ 1.03
DEPDC4Q8N2C3 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
DEPDC4Q8N2C3 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
DEPDC4Q8N2C3 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DEPDC4Q8N2C3 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.47■■□□□ 1.03
DEPDC4Q8N2C3 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.47■■□□□ 1.03
DEPDC4Q8N2C3 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
DEPDC4Q8N2C3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.03
DEPDC4Q8N2C3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.45■■□□□ 1.02
DEPDC4Q8N2C3 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DEPDC4Q8N2C3 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DEPDC4Q8N2C3 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
DEPDC4Q8N2C3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
DEPDC4Q8N2C3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DEPDC4Q8N2C3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.45■■□□□ 1.02
DEPDC4Q8N2C3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
DEPDC4Q8N2C3 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DEPDC4Q8N2C3 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DEPDC4Q8N2C3 AC004812.2-201ENST00000611079 2094 ntBASIC21.44■■□□□ 1.02
DEPDC4Q8N2C3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DEPDC4Q8N2C3 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
DEPDC4Q8N2C3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.44■■□□□ 1.02
DEPDC4Q8N2C3 AL157400.5-201ENST00000507624 621 ntBASIC21.44■■□□□ 1.02
DEPDC4Q8N2C3 AC012354.3-201ENST00000623734 483 ntBASIC21.44■■□□□ 1.02
DEPDC4Q8N2C3 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DEPDC4Q8N2C3 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DEPDC4Q8N2C3 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms