Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV4A0A0B4J268 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV4A0A0B4J268 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV4A0A0B4J268 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV4A0A0B4J268 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV4A0A0B4J268 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV4A0A0B4J268 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC16.73■□□□□ 0.27
TRAV4A0A0B4J268 PREB-202ENST00000406567 1910 ntTSL 5 BASIC16.73■□□□□ 0.27
TRAV4A0A0B4J268 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV4A0A0B4J268 MIR6765-201ENST00000614092 87 ntBASIC16.73■□□□□ 0.27
TRAV4A0A0B4J268 LSR-205ENST00000427250 1606 ntTSL 2 BASIC16.73■□□□□ 0.27
TRAV4A0A0B4J268 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV4A0A0B4J268 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV4A0A0B4J268 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV4A0A0B4J268 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV4A0A0B4J268 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAV4A0A0B4J268 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV4A0A0B4J268 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV4A0A0B4J268 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV4A0A0B4J268 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC16.72■□□□□ 0.27
TRAV4A0A0B4J268 AC141586.4-201ENST00000624558 1573 ntBASIC16.72■□□□□ 0.27
TRAV4A0A0B4J268 LINC01124-201ENST00000409786 2117 ntBASIC16.72■□□□□ 0.27
TRAV4A0A0B4J268 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV4A0A0B4J268 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV4A0A0B4J268 IDNK-203ENST00000405990 629 ntTSL 2 BASIC16.71■□□□□ 0.27
TRAV4A0A0B4J268 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TRAV4A0A0B4J268 SPCS2P3-201ENST00000500401 656 ntBASIC16.71■□□□□ 0.27
TRAV4A0A0B4J268 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC16.71■□□□□ 0.27
TRAV4A0A0B4J268 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC16.71■□□□□ 0.27
TRAV4A0A0B4J268 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV4A0A0B4J268 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV4A0A0B4J268 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
TRAV4A0A0B4J268 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV4A0A0B4J268 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV4A0A0B4J268 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TRAV4A0A0B4J268 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAV4A0A0B4J268 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV4A0A0B4J268 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV4A0A0B4J268 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV4A0A0B4J268 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV4A0A0B4J268 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV4A0A0B4J268 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV4A0A0B4J268 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
TRAV4A0A0B4J268 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 DUX4L9-201ENST00000449051 1259 ntBASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 AC087393.1-201ENST00000582896 145 ntBASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 U85056.1-201ENST00000616429 682 ntBASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV4A0A0B4J268 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
TRAV4A0A0B4J268 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TRAV4A0A0B4J268 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAV4A0A0B4J268 BRD4-212ENST00000630599 726 ntTSL 2 BASIC16.68■□□□□ 0.26
TRAV4A0A0B4J268 LINC00543-201ENST00000567234 1845 ntBASIC16.68■□□□□ 0.26
TRAV4A0A0B4J268 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRAV4A0A0B4J268 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV4A0A0B4J268 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
TRAV4A0A0B4J268 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV4A0A0B4J268 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV4A0A0B4J268 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV4A0A0B4J268 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC16.67■□□□□ 0.26
TRAV4A0A0B4J268 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV4A0A0B4J268 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC16.67■□□□□ 0.26
TRAV4A0A0B4J268 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV4A0A0B4J268 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV4A0A0B4J268 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV4A0A0B4J268 ABHD17AP5-201ENST00000580133 923 ntBASIC16.67■□□□□ 0.26
TRAV4A0A0B4J268 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
TRAV4A0A0B4J268 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV4A0A0B4J268 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV4A0A0B4J268 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
TRAV4A0A0B4J268 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV4A0A0B4J268 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV4A0A0B4J268 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV4A0A0B4J268 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV4A0A0B4J268 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAV4A0A0B4J268 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV4A0A0B4J268 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAV4A0A0B4J268 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV4A0A0B4J268 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV4A0A0B4J268 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV4A0A0B4J268 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV4A0A0B4J268 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAV4A0A0B4J268 AL592295.1-201ENST00000400984 884 ntBASIC16.65■□□□□ 0.26
TRAV4A0A0B4J268 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
TRAV4A0A0B4J268 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAV4A0A0B4J268 AC129492.7-201ENST00000622992 756 ntBASIC16.65■□□□□ 0.26
TRAV4A0A0B4J268 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms