Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV39A0A0B4J263 RPS2P7-201ENST00000447334 885 ntBASIC19.49■□□□□ 0.71
TRAV39A0A0B4J263 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.49■□□□□ 0.71
TRAV39A0A0B4J263 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV39A0A0B4J263 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV39A0A0B4J263 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV39A0A0B4J263 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV39A0A0B4J263 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 KRT18P10-201ENST00000388836 1287 ntBASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 LINC00543-201ENST00000567234 1845 ntBASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.48■□□□□ 0.71
TRAV39A0A0B4J263 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 HLA-L-211ENST00000482052 1765 ntBASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV39A0A0B4J263 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 KRT18P60-201ENST00000312876 1297 ntBASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 MIR6765-201ENST00000614092 87 ntBASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV39A0A0B4J263 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV39A0A0B4J263 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.45■□□□□ 0.7
TRAV39A0A0B4J263 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
TRAV39A0A0B4J263 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV39A0A0B4J263 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV39A0A0B4J263 AC129492.7-201ENST00000622992 756 ntBASIC19.45■□□□□ 0.7
TRAV39A0A0B4J263 AC004812.2-201ENST00000611079 2094 ntBASIC19.45■□□□□ 0.7
TRAV39A0A0B4J263 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.45■□□□□ 0.7
TRAV39A0A0B4J263 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC19.44■□□□□ 0.7
TRAV39A0A0B4J263 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV39A0A0B4J263 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TRAV39A0A0B4J263 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV39A0A0B4J263 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV39A0A0B4J263 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV39A0A0B4J263 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
TRAV39A0A0B4J263 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.44■□□□□ 0.7
TRAV39A0A0B4J263 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TRAV39A0A0B4J263 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV39A0A0B4J263 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TRAV39A0A0B4J263 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV39A0A0B4J263 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TRAV39A0A0B4J263 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV39A0A0B4J263 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV39A0A0B4J263 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV39A0A0B4J263 ABCB10P4-201ENST00000566803 2184 ntBASIC19.42■□□□□ 0.7
TRAV39A0A0B4J263 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.42■□□□□ 0.7
TRAV39A0A0B4J263 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TRAV39A0A0B4J263 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV39A0A0B4J263 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV39A0A0B4J263 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.41■□□□□ 0.7
TRAV39A0A0B4J263 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV39A0A0B4J263 DUX4L18-201ENST00000553347 1267 ntBASIC19.41■□□□□ 0.7
TRAV39A0A0B4J263 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV39A0A0B4J263 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
TRAV39A0A0B4J263 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV39A0A0B4J263 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAV39A0A0B4J263 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.41■□□□□ 0.7
TRAV39A0A0B4J263 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV39A0A0B4J263 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV39A0A0B4J263 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV39A0A0B4J263 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms