Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.24□□□□□ -0.13
SUMO3P55854 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
SUMO3P55854 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SUMO3P55854 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.23□□□□□ -0.13
SUMO3P55854 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.23□□□□□ -0.13
SUMO3P55854 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
SUMO3P55854 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
SUMO3P55854 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.23□□□□□ -0.13
SUMO3P55854 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 AC084364.1-201ENST00000551967 1556 ntBASIC14.23□□□□□ -0.13
SUMO3P55854 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SUMO3P55854 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
SUMO3P55854 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 AC008741.2-201ENST00000612792 3115 ntBASIC14.23□□□□□ -0.13
SUMO3P55854 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
SUMO3P55854 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.23□□□□□ -0.13
SUMO3P55854 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.23□□□□□ -0.13
SUMO3P55854 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.23□□□□□ -0.13
SUMO3P55854 FAM207CP-201ENST00000443486 507 ntBASIC14.23□□□□□ -0.13
SUMO3P55854 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.23□□□□□ -0.13
SUMO3P55854 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 AC093004.1-201ENST00000508850 424 ntBASIC14.23□□□□□ -0.13
SUMO3P55854 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.23□□□□□ -0.13
SUMO3P55854 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.23□□□□□ -0.13
SUMO3P55854 AL096865.1-201ENST00000606796 927 ntBASIC14.23□□□□□ -0.13
SUMO3P55854 AL158212.4-201ENST00000624062 1286 ntBASIC14.23□□□□□ -0.13
SUMO3P55854 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
SUMO3P55854 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 SSR4P1-203ENST00000599569 2260 ntBASIC14.23□□□□□ -0.13
SUMO3P55854 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.23□□□□□ -0.13
SUMO3P55854 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.23□□□□□ -0.13
SUMO3P55854 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.23□□□□□ -0.13
SUMO3P55854 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SUMO3P55854 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.23□□□□□ -0.13
SUMO3P55854 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 PAUPAR-201ENST00000630360 2965 ntBASIC14.22□□□□□ -0.13
SUMO3P55854 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.22□□□□□ -0.13
SUMO3P55854 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
SUMO3P55854 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SUMO3P55854 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SUMO3P55854 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.22□□□□□ -0.13
SUMO3P55854 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.22□□□□□ -0.13
SUMO3P55854 DOC2GP-202ENST00000514950 1163 ntBASIC14.22□□□□□ -0.13
SUMO3P55854 RRP7BP-205ENST00000566851 833 ntBASIC14.22□□□□□ -0.13
SUMO3P55854 AC036164.1-201ENST00000570544 333 ntBASIC14.22□□□□□ -0.13
SUMO3P55854 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.22□□□□□ -0.13
SUMO3P55854 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.22□□□□□ -0.13
SUMO3P55854 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.22□□□□□ -0.13
SUMO3P55854 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.22□□□□□ -0.13
SUMO3P55854 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SUMO3P55854 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.22□□□□□ -0.13
SUMO3P55854 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
SUMO3P55854 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
SUMO3P55854 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.22□□□□□ -0.13
SUMO3P55854 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.22□□□□□ -0.13
SUMO3P55854 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.22□□□□□ -0.13
SUMO3P55854 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SUMO3P55854 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SUMO3P55854 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms