Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 AUP1-204ENST00000463900 1645 ntTSL 1 (best)17.14■□□□□ 0.331e-8■□□□□ 11.2
RPS3P23396 AUP1-202ENST00000425118 1581 ntTSL 1 (best)16.61■□□□□ 0.251e-8■□□□□ 11.2
RPS3P23396 AUP1-206ENST00000466894 1658 ntTSL 516.06■□□□□ 0.161e-8■□□□□ 11.2
RPS3P23396 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC27.81■■■□□ 2.043e-6■□□□□ 11.1
RPS3P23396 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC26.04■■□□□ 1.763e-6■□□□□ 11.1
RPS3P23396 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.34■■□□□ 1.653e-6■□□□□ 11.1
RPS3P23396 PRPF40A-209ENST00000486100 569 ntTSL 417.81■□□□□ 0.443e-6■□□□□ 11.1
RPS3P23396 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.253e-6■□□□□ 11.1
RPS3P23396 PRPF40A-204ENST00000450303 496 ntTSL 316.55■□□□□ 0.243e-6■□□□□ 11.1
RPS3P23396 PRPF40A-212ENST00000545856 1358 ntTSL 1 (best)15.9■□□□□ 0.143e-6■□□□□ 11.1
RPS3P23396 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.92□□□□□ -0.183e-6■□□□□ 11.1
RPS3P23396 PRPF40A-201ENST00000354363 1622 ntTSL 213.85□□□□□ -0.193e-6■□□□□ 11.1
RPS3P23396 PRPF40A-211ENST00000493468 1043 ntTSL 1 (best)13.37□□□□□ -0.273e-6■□□□□ 11.1
RPS3P23396 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.01□□□□□ -0.333e-6■□□□□ 11.1
RPS3P23396 PRPF40A-203ENST00000448428 490 ntTSL 512.37□□□□□ -0.433e-6■□□□□ 11.1
RPS3P23396 PRPF40A-202ENST00000410080 8048 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.693e-6■□□□□ 11.1
RPS3P23396 H2AFV-203ENST00000349299 596 ntTSL 2 BASIC9.54□□□□□ -0.883e-6■□□□□ 11.1
RPS3P23396 PRPF40A-210ENST00000489741 776 ntTSL 36.04□□□□□ -1.443e-6■□□□□ 11.1
RPS3P23396 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.96□□□□□ -1.463e-6■□□□□ 11.1
RPS3P23396 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.345e-6■□□□□ 11.1
RPS3P23396 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.345e-6■□□□□ 11.1
RPS3P23396 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.725e-6■□□□□ 11.1
RPS3P23396 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.555e-6■□□□□ 11.1
RPS3P23396 UNC13D-216ENST00000591616 659 ntTSL 316.32■□□□□ 0.25e-6■□□□□ 11.1
RPS3P23396 ULK1-205ENST00000541761 1262 ntTSL 215.33■□□□□ 0.045e-6■□□□□ 11.1
RPS3P23396 DNA2-206ENST00000550357 543 ntTSL 414.6□□□□□ -0.075e-6■□□□□ 11.1
RPS3P23396 GTPBP1-203ENST00000458073 1350 ntTSL 514.56□□□□□ -0.085e-6■□□□□ 11.1
RPS3P23396 TLE3-209ENST00000557919 4294 ntTSL 514.49□□□□□ -0.095e-6■□□□□ 11.1
RPS3P23396 UNC13D-214ENST00000590856 695 ntTSL 313.24□□□□□ -0.295e-6■□□□□ 11.1
RPS3P23396 PPP2R2A-223ENST00000524169 784 ntTSL 313.06□□□□□ -0.325e-6■□□□□ 11.1
RPS3P23396 UNC13D-215ENST00000591563 4382 ntTSL 212.53□□□□□ -0.45e-6■□□□□ 11.1
RPS3P23396 SERINC3-201ENST00000255175 1726 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.54e-9■□□□□ 11.1
RPS3P23396 GTPBP1-208ENST00000475959 475 ntTSL 210.82□□□□□ -0.685e-6■□□□□ 11.1
RPS3P23396 SERINC3-202ENST00000342374 4445 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.684e-9■□□□□ 11.1
RPS3P23396 GTPBP1-204ENST00000460605 581 ntTSL 310.11□□□□□ -0.795e-6■□□□□ 11.1
RPS3P23396 SERINC3-203ENST00000411544 812 ntTSL 39.85□□□□□ -0.835e-6■□□□□ 11.1
RPS3P23396 MORF4L1-222ENST00000560710 908 ntTSL 27.46□□□□□ -1.225e-6■□□□□ 11.1
RPS3P23396 DNA2-202ENST00000399179 3207 ntTSL 27.26□□□□□ -1.255e-6■□□□□ 11.1
RPS3P23396 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.26□□□□□ -1.255e-6■□□□□ 11.1
RPS3P23396 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.66□□□□□ -1.345e-6■□□□□ 11.1
RPS3P23396 MORF4L1-211ENST00000558923 625 ntTSL 35.46□□□□□ -1.545e-6■□□□□ 11.1
RPS3P23396 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.575e-6■□□□□ 11.1
RPS3P23396 PPP2R2A-208ENST00000518890 1237 ntTSL 24.14□□□□□ -1.755e-6■□□□□ 11.1
RPS3P23396 PPP2R2A-204ENST00000518208 1490 ntTSL 21.38□□□□□ -2.195e-6■□□□□ 11.1
RPS3P23396 PPP2R2A-205ENST00000518215 1163 ntTSL 31.21□□□□□ -2.225e-6■□□□□ 11.1
RPS3P23396 CTSA-217ENST00000607482 403 ntTSL 318.56■□□□□ 0.568e-9■□□□□ 11.1
RPS3P23396 CTSA-218ENST00000607814 584 ntTSL 413.13□□□□□ -0.318e-9■□□□□ 11.1
RPS3P23396 UBE2K-207ENST00000513231 871 ntTSL 1 (best)23.23■■□□□ 1.315e-9■□□□□ 11.1
RPS3P23396 UBE2K-206ENST00000510934 589 ntTSL 219.14■□□□□ 0.655e-9■□□□□ 11.1
RPS3P23396 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.03■□□□□ 0.645e-9■□□□□ 11.1
RPS3P23396 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.635e-9■□□□□ 11.1
RPS3P23396 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.94■□□□□ 0.625e-9■□□□□ 11.1
RPS3P23396 UBE2K-202ENST00000438068 2262 ntTSL 218.53■□□□□ 0.565e-9■□□□□ 11.1
RPS3P23396 EIF3D-211ENST00000478547 452 ntTSL 37.46□□□□□ -1.228e-8■□□□□ 11.1
RPS3P23396 NUP205-210ENST00000607647 4518 ntTSL 55.43□□□□□ -1.545e-6■□□□□ 11.1
RPS3P23396 EIF3H-212ENST00000611080 1265 ntTSL 5 BASIC8.87□□□□□ -0.996e-7■□□□□ 11.1
RPS3P23396 EIF3H-201ENST00000276682 2041 ntTSL 2 BASIC8.3□□□□□ -1.086e-7■□□□□ 11.1
RPS3P23396 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.656e-7■□□□□ 11.1
RPS3P23396 SMOC1-204ENST00000555917 570 ntTSL 413□□□□□ -0.333e-8■□□□□ 11.1
RPS3P23396 ERP29-204ENST00000552052 284 ntTSL 310.3□□□□□ -0.766e-24■□□□□ 11.1
RPS3P23396 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.03■□□□□ 0.645e-6■□□□□ 11.1
RPS3P23396 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.77■□□□□ 0.447e-9■□□□□ 11.1
RPS3P23396 C7orf73-203ENST00000509448 581 ntTSL 416.61■□□□□ 0.255e-6■□□□□ 11.1
RPS3P23396 VDAC2-212ENST00000481876 822 ntTSL 315.85■□□□□ 0.135e-6■□□□□ 11.1
RPS3P23396 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.065e-6■□□□□ 11.1
RPS3P23396 MAP4-212ENST00000468075 487 ntTSL 515.02■□□□□ -05e-6■□□□□ 11.1
RPS3P23396 VDAC2-210ENST00000472137 859 ntTSL 514.9□□□□□ -0.025e-6■□□□□ 11.1
RPS3P23396 VDAC2-204ENST00000344036 681 ntTSL 314.6□□□□□ -0.075e-6■□□□□ 11.1
RPS3P23396 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.37□□□□□ -0.115e-6■□□□□ 11.1
RPS3P23396 VDAC2-208ENST00000468285 850 ntTSL 213.97□□□□□ -0.175e-6■□□□□ 11.1
RPS3P23396 VDAC2-211ENST00000475142 819 ntTSL 313.97□□□□□ -0.175e-6■□□□□ 11.1
RPS3P23396 VDAC2-213ENST00000498394 804 ntTSL 513.56□□□□□ -0.245e-6■□□□□ 11.1
RPS3P23396 C7orf73-201ENST00000422968 2004 ntTSL 1 (best)13.47□□□□□ -0.255e-6■□□□□ 11.1
RPS3P23396 HSPA4-204ENST00000615899 2204 ntTSL 5 BASIC12.96□□□□□ -0.331e-12■□□□□ 11.1
RPS3P23396 AP1S1-202ENST00000429457 573 ntTSL 512.63□□□□□ -0.395e-6■□□□□ 11.1
RPS3P23396 AC005381.1-203ENST00000591920 569 ntTSL 512.26□□□□□ -0.455e-6■□□□□ 11.1
RPS3P23396 VDAC2-209ENST00000470745 661 ntTSL 312.1□□□□□ -0.475e-6■□□□□ 11.1
RPS3P23396 HSPA4-201ENST00000304858 4825 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.567e-9■□□□□ 11.1
RPS3P23396 SNRPE-203ENST00000469451 248 ntTSL 311.32□□□□□ -0.65e-6■□□□□ 11.1
RPS3P23396 BCOR-212ENST00000615339 2618 ntTSL 5 BASIC10.94□□□□□ -0.665e-6■□□□□ 11.1
RPS3P23396 BCOR-206ENST00000406200 4216 ntTSL 29.13□□□□□ -0.955e-6■□□□□ 11.1
RPS3P23396 AC005381.1-204ENST00000585697 599 ntTSL 3 BASIC8.99□□□□□ -0.975e-6■□□□□ 11.1
RPS3P23396 TFDP2-209ENST00000477292 1403 ntTSL 2 BASIC8.73□□□□□ -1.015e-6■□□□□ 11.1
RPS3P23396 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.045e-6■□□□□ 11.1
RPS3P23396 MAP4-206ENST00000423088 899 ntTSL 38.35□□□□□ -1.075e-6■□□□□ 11.1
RPS3P23396 DDX3X-222ENST00000631641 583 ntTSL 38.13□□□□□ -1.115e-6■□□□□ 11.1
RPS3P23396 MAP4-210ENST00000439356 2743 ntTSL 1 (best) BASIC8.01□□□□□ -1.135e-6■□□□□ 11.1
RPS3P23396 TFDP2-213ENST00000487734 1469 ntTSL 57.97□□□□□ -1.135e-6■□□□□ 11.1
RPS3P23396 BCOR-211ENST00000490976 3480 ntTSL 27.96□□□□□ -1.135e-6■□□□□ 11.1
RPS3P23396 DDX3X-211ENST00000615742 485 ntTSL 47.91□□□□□ -1.145e-6■□□□□ 11.1
RPS3P23396 TFDP2-212ENST00000486111 2360 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.175e-6■□□□□ 11.1
RPS3P23396 MAP4-209ENST00000434267 2772 ntTSL 2 BASIC7.76□□□□□ -1.175e-6■□□□□ 11.1
RPS3P23396 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.175e-6■□□□□ 11.1
RPS3P23396 TFDP2-206ENST00000474279 379 ntTSL 27.58□□□□□ -1.25e-6■□□□□ 11.1
RPS3P23396 NUP205-202ENST00000461255 1447 ntTSL 57.58□□□□□ -1.25e-6■□□□□ 11.1
RPS3P23396 RPS15A-211ENST00000575669 3828 nt7.39□□□□□ -1.232e-6■□□□□ 11.1
RPS3P23396 C7orf73-202ENST00000507606 2450 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.235e-6■□□□□ 11.1
RPS3P23396 DDX3X-205ENST00000480592 1001 ntTSL 1 (best)7.24□□□□□ -1.255e-6■□□□□ 11.1
RPS3P23396 TFDP2-222ENST00000495310 1442 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.265e-6■□□□□ 11.1
RPS3P23396 NUP205-208ENST00000490439 653 ntTSL 37.16□□□□□ -1.265e-6■□□□□ 11.1
Retrieved 100 of 24,271 protein–RNA pairs in 437.8 ms