RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 NISCHQ9Y2I1 1504 aa37.72■■■■□ 3.63
PRPF40A-212ENST00000545856 CCDC180Q9P1Z9 1646 aa33.42■■■□□ 2.94
PRPF40A-212ENST00000545856 ABCC9O60706 1549 aa31.66■■■□□ 2.66
PRPF40A-212ENST00000545856 ZCCHC6Q5VYS8 1495 aaKnown RBP31.6■■■□□ 2.65
PRPF40A-212ENST00000545856 DCAF1Q9Y4B6 1507 aa31.41■■■□□ 2.62
PRPF40A-212ENST00000545856 MYO15BQ96JP2 1530 aa31.33■■■□□ 2.61
PRPF40A-212ENST00000545856 NACADO15069 1562 aa31.18■■■□□ 2.58
PRPF40A-212ENST00000545856 RB1CC1Q8TDY2 1594 aa31.02■■■□□ 2.56
PRPF40A-212ENST00000545856 DCAF8L2P0C7V8 631 aa30.89■■■□□ 2.54
PRPF40A-212ENST00000545856 UNC13AQ9UPW8 1703 aa30.29■■■□□ 2.44
PRPF40A-212ENST00000545856 SCRIBQ14160 1630 aa30.27■■■□□ 2.44
PRPF40A-212ENST00000545856 SHROOM4Q9ULL8 1493 aa29.99■■■□□ 2.39
PRPF40A-212ENST00000545856 BICRAQ9NZM4 1560 aa29.94■■■□□ 2.38
PRPF40A-212ENST00000545856 PABPN1Q86U42 306 aaKnown RBP eCLIP29.57■■■□□ 2.32
PRPF40A-212ENST00000545856 BAZ1AQ9NRL2 1556 aaPredicted RBP29.26■■■□□ 2.27
PRPF40A-212ENST00000545856 SMARCA4P51532 1647 aa29.14■■■□□ 2.26
PRPF40A-212ENST00000545856 CECR2Q9BXF3 1484 aa29.14■■■□□ 2.25
PRPF40A-212ENST00000545856 EIF4G1Q04637 1599 aaKnown RBP29.13■■■□□ 2.25
PRPF40A-212ENST00000545856 MROH2BQ7Z745 1585 aa28.98■■■□□ 2.23
PRPF40A-212ENST00000545856 PEG3Q9GZU2 1588 aa28.95■■■□□ 2.23
PRPF40A-212ENST00000545856 RSF1Q96T23 1441 aaPredicted RBP28.91■■■□□ 2.22
PRPF40A-212ENST00000545856 SMARCA2P51531 1590 aa28.87■■■□□ 2.21
PRPF40A-212ENST00000545856 CC2D2AQ9P2K1 1620 aa28.8■■■□□ 2.2
PRPF40A-212ENST00000545856 ATAD2BQ9ULI0 1458 aa28.74■■■□□ 2.19
PRPF40A-212ENST00000545856 WIZO95785 1651 aa28.71■■■□□ 2.19
PRPF40A-212ENST00000545856 HMGXB3Q12766 1538 aa28.69■■■□□ 2.18
PRPF40A-212ENST00000545856 NCAPD3P42695 1498 aa28.69■■■□□ 2.18
PRPF40A-212ENST00000545856 TOP2AP11388 1531 aaKnown RBP28.58■■■□□ 2.17
PRPF40A-212ENST00000545856 BAZ1BQ9UIG0 1483 aaKnown RBP28.57■■■□□ 2.16
PRPF40A-212ENST00000545856 SUPT5HO00267 1087 aaKnown RBP28.5■■■□□ 2.15
PRPF40A-212ENST00000545856 DNAJC5BQ9UF47 199 aa28.26■■■□□ 2.12
PRPF40A-212ENST00000545856 CCDC88BA6NC98 1476 aa28.11■■■□□ 2.09
PRPF40A-212ENST00000545856 PRDM2Q13029 1718 aa27.89■■■□□ 2.05
PRPF40A-212ENST00000545856 LAMC3Q9Y6N6 1575 aa27.89■■■□□ 2.05
PRPF40A-212ENST00000545856 CFTRP13569 1480 aa27.85■■■□□ 2.05
PRPF40A-212ENST00000545856 CADPSQ9ULU8 1353 aa27.83■■■□□ 2.05
PRPF40A-212ENST00000545856 PDS5BQ9NTI5 1447 aa27.61■■■□□ 2.01
PRPF40A-212ENST00000545856 NESP48681 1621 aa27.58■■■□□ 2.01
PRPF40A-212ENST00000545856 FANCD2Q9BXW9 1451 aa27.5■■□□□ 1.99
PRPF40A-212ENST00000545856 CEP164Q9UPV0 1460 aa27.44■■□□□ 1.98
PRPF40A-212ENST00000545856 KIF21AQ7Z4S6 1674 aa27.44■■□□□ 1.98
PRPF40A-212ENST00000545856 ABCC8Q09428 1581 aa27.35■■□□□ 1.97
PRPF40A-212ENST00000545856 ERCC6Q03468 1493 aa27.32■■□□□ 1.96
PRPF40A-212ENST00000545856 WRNQ14191 1432 aaPredicted RBP eCLIP27.29■■□□□ 1.96
PRPF40A-212ENST00000545856 BIVM-ERCC5R4GMW8 1640 aa27.26■■□□□ 1.95
PRPF40A-212ENST00000545856 MRC2Q9UBG0 1479 aa27.26■■□□□ 1.95
PRPF40A-212ENST00000545856 DNMBPQ6XZF7 1577 aa27.26■■□□□ 1.95
PRPF40A-212ENST00000545856 TOP2BQ02880 1626 aa27.23■■□□□ 1.95
PRPF40A-212ENST00000545856 THOC2Q8NI27 1593 aaKnown RBP27.21■■□□□ 1.95
PRPF40A-212ENST00000545856 WDR62O43379 1518 aa27.19■■□□□ 1.94
PRPF40A-212ENST00000545856 CUX1P39880 1505 aa27.17■■□□□ 1.94
PRPF40A-212ENST00000545856 SYNJ1O43426 1573 aa27.16■■□□□ 1.94
PRPF40A-212ENST00000545856 URB2Q14146 1524 aaKnown RBP27.15■■□□□ 1.94
PRPF40A-212ENST00000545856 TOPBP1Q92547 1522 aa27.15■■□□□ 1.94
PRPF40A-212ENST00000545856 CHIC1Q5VXU3 224 aa27.09■■□□□ 1.93
PRPF40A-212ENST00000545856 TRIM41Q8WV44 630 aa27.01■■□□□ 1.91
PRPF40A-212ENST00000545856 FGD5Q6ZNL6 1462 aa26.98■■□□□ 1.91
PRPF40A-212ENST00000545856 POLA1P09884 1462 aaPredicted RBP26.96■■□□□ 1.91
PRPF40A-212ENST00000545856 CUX2O14529 1486 aa26.92■■□□□ 1.9
PRPF40A-212ENST00000545856 WDR97A6NE52 1622 aa26.89■■□□□ 1.9
PRPF40A-212ENST00000545856 IFT140Q96RY7 1462 aa26.87■■□□□ 1.89
PRPF40A-212ENST00000545856 TARBP1Q13395 1621 aaKnown RBP26.85■■□□□ 1.89
PRPF40A-212ENST00000545856 ABCA10Q8WWZ4 1543 aa26.84■■□□□ 1.89
PRPF40A-212ENST00000545856 SOGA1O94964 1423 aa26.82■■□□□ 1.88
PRPF40A-212ENST00000545856 EEA1Q15075 1411 aa26.77■■□□□ 1.88
PRPF40A-212ENST00000545856 RAD54L2Q9Y4B4 1467 aa26.72■■□□□ 1.87
PRPF40A-212ENST00000545856 KIF27Q86VH2 1401 aa26.71■■□□□ 1.87
PRPF40A-212ENST00000545856 ABCA5Q8WWZ7 1642 aa26.69■■□□□ 1.86
PRPF40A-212ENST00000545856 EIF4G3O43432 1585 aaKnown RBP26.6■■□□□ 1.85
PRPF40A-212ENST00000545856 ERICH3Q5RHP9 1530 aa26.58■■□□□ 1.84
PRPF40A-212ENST00000545856 GAPVD1Q14C86 1478 aa26.57■■□□□ 1.84
PRPF40A-212ENST00000545856 PBRM1Q86U86 1689 aa26.55■■□□□ 1.84
PRPF40A-212ENST00000545856 GRIN2BQ13224 1484 aa26.52■■□□□ 1.84
PRPF40A-212ENST00000545856 ZNF608Q9ULD9 1512 aaPredicted RBP26.51■■□□□ 1.83
PRPF40A-212ENST00000545856 CUL7Q14999 1698 aa26.51■■□□□ 1.83
PRPF40A-212ENST00000545856 TDRD9Q8NDG6 1382 aaKnown RBP26.49■■□□□ 1.83
PRPF40A-212ENST00000545856 RUSC2Q8N2Y8 1516 aa26.45■■□□□ 1.83
PRPF40A-212ENST00000545856 AQRO60306 1485 aaKnown RBP eCLIP26.45■■□□□ 1.822e-7■■■■■ 31.9
PRPF40A-212ENST00000545856 MAGI1Q96QZ7 1491 aaPredicted RBP26.43■■□□□ 1.82
PRPF40A-212ENST00000545856 CSRNP3Q8WYN3 585 aa26.41■■□□□ 1.82
PRPF40A-212ENST00000545856 IGF1RP08069 1367 aa26.41■■□□□ 1.82
PRPF40A-212ENST00000545856 KIF21BO75037 1637 aa26.4■■□□□ 1.82
PRPF40A-212ENST00000545856 ADAMTS12P58397 1594 aa26.36■■□□□ 1.81
PRPF40A-212ENST00000545856 PRXQ9BXM0 1461 aa26.35■■□□□ 1.81
PRPF40A-212ENST00000545856 FHAD1B1AJZ9 1412 aa26.33■■□□□ 1.8
PRPF40A-212ENST00000545856 SNAPC4Q5SXM2 1469 aa26.3■■□□□ 1.8
PRPF40A-212ENST00000545856 CARMIL1Q5VZK9 1371 aa26.29■■□□□ 1.8
PRPF40A-212ENST00000545856 RAPGEF2Q9Y4G8 1499 aa26.27■■□□□ 1.8
PRPF40A-212ENST00000545856 SYNJ2O15056 1496 aa26.26■■□□□ 1.79
PRPF40A-212ENST00000545856 FAM9AQ8IZU1 332 aaPredicted RBP26.24■■□□□ 1.79
PRPF40A-212ENST00000545856 GOLGA3Q08378 1498 aa26.23■■□□□ 1.79
PRPF40A-212ENST00000545856 GRIN2AQ12879 1464 aa26.15■■□□□ 1.78
PRPF40A-212ENST00000545856 CHD1O14646 1710 aa26.12■■□□□ 1.77
PRPF40A-212ENST00000545856 CTTNBP2Q8WZ74 1663 aa26.09■■□□□ 1.77
PRPF40A-212ENST00000545856 CHMP7Q8WUX9 453 aaPredicted RBP26.07■■□□□ 1.76
PRPF40A-212ENST00000545856 NUP160Q12769 1436 aa26.03■■□□□ 1.76
PRPF40A-212ENST00000545856 TNIKQ9UKE5 1360 aa26.01■■□□□ 1.75
PRPF40A-212ENST00000545856 CEP170Q5SW79 1584 aa25.96■■□□□ 1.75
PRPF40A-212ENST00000545856 KIAA0586Q9BVV6 1533 aa25.96■■□□□ 1.75
PRPF40A-212ENST00000545856 IQGAP2Q13576 1575 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms