RNA–Protein interactions for RNA: ENST00000607482.5

CTSA-217, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 403 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-217ENST00000607482 NISCHQ9Y2I1 1504 aa46.84■■■■■ 5.09
CTSA-217ENST00000607482 CCDC180Q9P1Z9 1646 aa41.78■■■■■ 4.28
CTSA-217ENST00000607482 ABCC9O60706 1549 aa41.44■■■■■ 4.23
CTSA-217ENST00000607482 DCAF8L2P0C7V8 631 aa39.7■■■■□ 3.95
CTSA-217ENST00000607482 RB1CC1Q8TDY2 1594 aa39.64■■■■□ 3.94
CTSA-217ENST00000607482 NACADO15069 1562 aa39.45■■■■□ 3.91
CTSA-217ENST00000607482 MYO15BQ96JP2 1530 aa38.98■■■■□ 3.83
CTSA-217ENST00000607482 ZCCHC6Q5VYS8 1495 aaKnown RBP38.89■■■■□ 3.82
CTSA-217ENST00000607482 PABPN1Q86U42 306 aaKnown RBP eCLIP38.74■■■■□ 3.79
CTSA-217ENST00000607482 DCAF1Q9Y4B6 1507 aa38.67■■■■□ 3.78
CTSA-217ENST00000607482 UNC13AQ9UPW8 1703 aa38.57■■■■□ 3.76
CTSA-217ENST00000607482 DNAJC5BQ9UF47 199 aa38.34■■■■□ 3.73
CTSA-217ENST00000607482 BICRAQ9NZM4 1560 aa38.3■■■■□ 3.72
CTSA-217ENST00000607482 SCRIBQ14160 1630 aa38.2■■■■□ 3.71
CTSA-217ENST00000607482 SHROOM4Q9ULL8 1493 aa37.92■■■■□ 3.66
CTSA-217ENST00000607482 EIF4G1Q04637 1599 aaKnown RBP37.42■■■■□ 3.58
CTSA-217ENST00000607482 CC2D2AQ9P2K1 1620 aa37.39■■■■□ 3.58
CTSA-217ENST00000607482 CECR2Q9BXF3 1484 aa37.28■■■■□ 3.56
CTSA-217ENST00000607482 SMARCA4P51532 1647 aa36.43■■■■□ 3.42
CTSA-217ENST00000607482 NCAPD3P42695 1498 aa36.39■■■■□ 3.42
CTSA-217ENST00000607482 BAZ1AQ9NRL2 1556 aaPredicted RBP36.38■■■■□ 3.41
CTSA-217ENST00000607482 ATAD2BQ9ULI0 1458 aa36.37■■■■□ 3.41
CTSA-217ENST00000607482 SMARCA2P51531 1590 aa36.34■■■■□ 3.41
CTSA-217ENST00000607482 HMGXB3Q12766 1538 aa36.14■■■■□ 3.38
CTSA-217ENST00000607482 BAZ1BQ9UIG0 1483 aaKnown RBP36.12■■■■□ 3.37
CTSA-217ENST00000607482 MROH2BQ7Z745 1585 aa36.09■■■■□ 3.37
CTSA-217ENST00000607482 PEG3Q9GZU2 1588 aa36■■■■□ 3.35
CTSA-217ENST00000607482 ERCC6Q03468 1493 aa35.86■■■■□ 3.33
CTSA-217ENST00000607482 WIZO95785 1651 aa35.69■■■■□ 3.3
CTSA-217ENST00000607482 NESP48681 1621 aa35.68■■■■□ 3.3
CTSA-217ENST00000607482 RSF1Q96T23 1441 aaPredicted RBP35.56■■■■□ 3.28
CTSA-217ENST00000607482 LAMC3Q9Y6N6 1575 aa35.51■■■■□ 3.28
CTSA-217ENST00000607482 CUX2O14529 1486 aa35.48■■■■□ 3.27
CTSA-217ENST00000607482 PDS5BQ9NTI5 1447 aa35.4■■■■□ 3.26
CTSA-217ENST00000607482 CADPSQ9ULU8 1353 aa35.38■■■■□ 3.26
CTSA-217ENST00000607482 TOP2AP11388 1531 aaKnown RBP35.29■■■■□ 3.24
CTSA-217ENST00000607482 KIF21AQ7Z4S6 1674 aa35.2■■■■□ 3.23
CTSA-217ENST00000607482 THOC2Q8NI27 1593 aaKnown RBP35.13■■■■□ 3.21
CTSA-217ENST00000607482 CFTRP13569 1480 aa35.02■■■■□ 3.2
CTSA-217ENST00000607482 MRC2Q9UBG0 1479 aa35■■■■□ 3.19
CTSA-217ENST00000607482 CEP164Q9UPV0 1460 aa35■■■■□ 3.19
CTSA-217ENST00000607482 FANCD2Q9BXW9 1451 aa34.98■■■■□ 3.19
CTSA-217ENST00000607482 DNAJC5Q9H3Z4 198 aa34.94■■■■□ 3.18
CTSA-217ENST00000607482 CCDC88BA6NC98 1476 aa34.91■■■■□ 3.18
CTSA-217ENST00000607482 WDR62O43379 1518 aa34.82■■■■□ 3.16
CTSA-217ENST00000607482 PRDM2Q13029 1718 aa34.65■■■■□ 3.14
CTSA-217ENST00000607482 SUPT5HO00267 1087 aaKnown RBP34.62■■■■□ 3.13
CTSA-217ENST00000607482 URB2Q14146 1524 aaKnown RBP34.58■■■■□ 3.13
CTSA-217ENST00000607482 ABCC8Q09428 1581 aa34.37■■■■□ 3.09
CTSA-217ENST00000607482 TOPBP1Q92547 1522 aa34.33■■■■□ 3.09
CTSA-217ENST00000607482 IFT140Q96RY7 1462 aa34.26■■■■□ 3.07
CTSA-217ENST00000607482 DNMBPQ6XZF7 1577 aa34.25■■■■□ 3.07
CTSA-217ENST00000607482 ZNF608Q9ULD9 1512 aaPredicted RBP34.09■■■■□ 3.05
CTSA-217ENST00000607482 OSCARQ8IYS5 282 aa34.09■■■■□ 3.05
CTSA-217ENST00000607482 POLA1P09884 1462 aaPredicted RBP34.01■■■■□ 3.03
CTSA-217ENST00000607482 SOGA1O94964 1423 aa33.96■■■■□ 3.03
CTSA-217ENST00000607482 EIF4G3O43432 1585 aaKnown RBP33.93■■■■□ 3.02
CTSA-217ENST00000607482 AQRO60306 1485 aaKnown RBP eCLIP33.92■■■■□ 3.02
CTSA-217ENST00000607482 TARBP1Q13395 1621 aaKnown RBP33.91■■■■□ 3.02
CTSA-217ENST00000607482 RAD54L2Q9Y4B4 1467 aa33.9■■■■□ 3.02
CTSA-217ENST00000607482 FGD5Q6ZNL6 1462 aa33.89■■■■□ 3.02
CTSA-217ENST00000607482 CUX1P39880 1505 aa33.89■■■■□ 3.02
CTSA-217ENST00000607482 TDRD9Q8NDG6 1382 aaKnown RBP33.83■■■■□ 3.01
CTSA-217ENST00000607482 FBLN2P98095 1184 aa33.82■■■■□ 3
CTSA-217ENST00000607482 TRIM41Q8WV44 630 aa33.8■■■■□ 3
CTSA-217ENST00000607482 WDR97A6NE52 1622 aa33.64■■■□□ 2.98
CTSA-217ENST00000607482 WRNQ14191 1432 aaPredicted RBP eCLIP33.62■■■□□ 2.97
CTSA-217ENST00000607482 CHMP7Q8WUX9 453 aaPredicted RBP33.59■■■□□ 2.97
CTSA-217ENST00000607482 GRIN2BQ13224 1484 aa33.57■■■□□ 2.97
CTSA-217ENST00000607482 SNAPC4Q5SXM2 1469 aa33.57■■■□□ 2.97
CTSA-217ENST00000607482 CHD1O14646 1710 aa33.57■■■□□ 2.96
CTSA-217ENST00000607482 GAPVD1Q14C86 1478 aa33.53■■■□□ 2.96
CTSA-217ENST00000607482 MAGI1Q96QZ7 1491 aaPredicted RBP33.5■■■□□ 2.95
CTSA-217ENST00000607482 ABCA10Q8WWZ4 1543 aa33.5■■■□□ 2.95
CTSA-217ENST00000607482 TOP2BQ02880 1626 aa33.49■■■□□ 2.95
CTSA-217ENST00000607482 SYNJ1O43426 1573 aa33.45■■■□□ 2.95
CTSA-217ENST00000607482 BIVM-ERCC5R4GMW8 1640 aa33.44■■■□□ 2.94
CTSA-217ENST00000607482 RIMBP3CA6NJZ7 1639 aa33.41■■■□□ 2.94
CTSA-217ENST00000607482 RIMBP3BA6NNM3 1639 aa33.41■■■□□ 2.94
CTSA-217ENST00000607482 RIMBP3Q9UFD9 1639 aa33.41■■■□□ 2.94
CTSA-217ENST00000607482 PBRM1Q86U86 1689 aa33.39■■■□□ 2.94
CTSA-217ENST00000607482 SYNJ2O15056 1496 aa33.39■■■□□ 2.94
CTSA-217ENST00000607482 ARHGEF11O15085 1522 aa33.38■■■□□ 2.93
CTSA-217ENST00000607482 ABCA5Q8WWZ7 1642 aa33.35■■■□□ 2.93
CTSA-217ENST00000607482 CYB5RLQ6IPT4 315 aa33.29■■■□□ 2.92
CTSA-217ENST00000607482 CLASP1Q7Z460 1538 aa33.16■■■□□ 2.9
CTSA-217ENST00000607482 FHAD1B1AJZ9 1412 aa33.11■■■□□ 2.89
CTSA-217ENST00000607482 ERICH3Q5RHP9 1530 aa33.11■■■□□ 2.89
CTSA-217ENST00000607482 GRIN2AQ12879 1464 aa33.11■■■□□ 2.89
CTSA-217ENST00000607482 ADAMTS12P58397 1594 aa33.1■■■□□ 2.89
CTSA-217ENST00000607482 ARAP1Q96P48 1450 aa33.05■■■□□ 2.88
CTSA-217ENST00000607482 KIF27Q86VH2 1401 aa32.99■■■□□ 2.87
CTSA-217ENST00000607482 NUP160Q12769 1436 aa32.93■■■□□ 2.86
CTSA-217ENST00000607482 CEP170Q5SW79 1584 aa32.91■■■□□ 2.86
CTSA-217ENST00000607482 TRHP20396 242 aaPredicted RBP32.86■■■□□ 2.85
CTSA-217ENST00000607482 IGF1RP08069 1367 aa32.83■■■□□ 2.85
CTSA-217ENST00000607482 JPH4Q96JJ6 628 aa32.75■■■□□ 2.83
CTSA-217ENST00000607482 CUL7Q14999 1698 aa32.74■■■□□ 2.83
CTSA-217ENST00000607482 PRG4Q92954 1404 aaPredicted RBP32.69■■■□□ 2.82
CTSA-217ENST00000607482 CARMIL1Q5VZK9 1371 aa32.69■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 138.4 ms