RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 NISCHQ9Y2I1 1504 aa41.82■■■■■ 4.29
PRPF40A-204ENST00000450303 CCDC180Q9P1Z9 1646 aa37.31■■■■□ 3.56
PRPF40A-204ENST00000450303 ABCC9O60706 1549 aa37.04■■■■□ 3.52
PRPF40A-204ENST00000450303 RB1CC1Q8TDY2 1594 aa35.35■■■■□ 3.25
PRPF40A-204ENST00000450303 DCAF8L2P0C7V8 631 aa35.3■■■■□ 3.24
PRPF40A-204ENST00000450303 NACADO15069 1562 aa35.18■■■■□ 3.22
PRPF40A-204ENST00000450303 MYO15BQ96JP2 1530 aa34.76■■■■□ 3.16
PRPF40A-204ENST00000450303 ZCCHC6Q5VYS8 1495 aaKnown RBP34.72■■■■□ 3.15
PRPF40A-204ENST00000450303 UNC13AQ9UPW8 1703 aa34.63■■■■□ 3.13
PRPF40A-204ENST00000450303 PABPN1Q86U42 306 aaKnown RBP eCLIP34.6■■■■□ 3.13
PRPF40A-204ENST00000450303 DCAF1Q9Y4B6 1507 aa34.5■■■■□ 3.11
PRPF40A-204ENST00000450303 DNAJC5BQ9UF47 199 aa34.42■■■■□ 3.1
PRPF40A-204ENST00000450303 BICRAQ9NZM4 1560 aa34.33■■■■□ 3.09
PRPF40A-204ENST00000450303 SCRIBQ14160 1630 aa34.13■■■■□ 3.05
PRPF40A-204ENST00000450303 SHROOM4Q9ULL8 1493 aa33.77■■■■□ 3
PRPF40A-204ENST00000450303 EIF4G1Q04637 1599 aaKnown RBP33.45■■■□□ 2.95
PRPF40A-204ENST00000450303 CC2D2AQ9P2K1 1620 aa33.44■■■□□ 2.94
PRPF40A-204ENST00000450303 CECR2Q9BXF3 1484 aa33.28■■■□□ 2.92
PRPF40A-204ENST00000450303 SMARCA4P51532 1647 aa32.55■■■□□ 2.8
PRPF40A-204ENST00000450303 NCAPD3P42695 1498 aa32.48■■■□□ 2.79
PRPF40A-204ENST00000450303 ATAD2BQ9ULI0 1458 aa32.48■■■□□ 2.79
PRPF40A-204ENST00000450303 BAZ1AQ9NRL2 1556 aaPredicted RBP32.42■■■□□ 2.78
PRPF40A-204ENST00000450303 SMARCA2P51531 1590 aa32.37■■■□□ 2.77
PRPF40A-204ENST00000450303 MROH2BQ7Z745 1585 aa32.28■■■□□ 2.76
PRPF40A-204ENST00000450303 HMGXB3Q12766 1538 aa32.26■■■□□ 2.75
PRPF40A-204ENST00000450303 BAZ1BQ9UIG0 1483 aaKnown RBP32.19■■■□□ 2.74
PRPF40A-204ENST00000450303 PEG3Q9GZU2 1588 aa32.16■■■□□ 2.74
PRPF40A-204ENST00000450303 NESP48681 1621 aa31.94■■■□□ 2.7
PRPF40A-204ENST00000450303 WIZO95785 1651 aa31.94■■■□□ 2.7
PRPF40A-204ENST00000450303 ERCC6Q03468 1493 aa31.92■■■□□ 2.7
PRPF40A-204ENST00000450303 RSF1Q96T23 1441 aaPredicted RBP31.74■■■□□ 2.67
PRPF40A-204ENST00000450303 LAMC3Q9Y6N6 1575 aa31.69■■■□□ 2.66
PRPF40A-204ENST00000450303 CUX2O14529 1486 aa31.65■■■□□ 2.66
PRPF40A-204ENST00000450303 CADPSQ9ULU8 1353 aa31.55■■■□□ 2.64
PRPF40A-204ENST00000450303 KIF21AQ7Z4S6 1674 aa31.53■■■□□ 2.64
PRPF40A-204ENST00000450303 PDS5BQ9NTI5 1447 aa31.5■■■□□ 2.63
PRPF40A-204ENST00000450303 TOP2AP11388 1531 aaKnown RBP31.49■■■□□ 2.63
PRPF40A-204ENST00000450303 THOC2Q8NI27 1593 aaKnown RBP31.47■■■□□ 2.63
PRPF40A-204ENST00000450303 DNAJC5Q9H3Z4 198 aa31.25■■■□□ 2.59
PRPF40A-204ENST00000450303 CFTRP13569 1480 aa31.25■■■□□ 2.59
PRPF40A-204ENST00000450303 MRC2Q9UBG0 1479 aa31.22■■■□□ 2.59
PRPF40A-204ENST00000450303 FANCD2Q9BXW9 1451 aa31.2■■■□□ 2.58
PRPF40A-204ENST00000450303 CEP164Q9UPV0 1460 aa31.18■■■□□ 2.58
PRPF40A-204ENST00000450303 CCDC88BA6NC98 1476 aa31.17■■■□□ 2.58
PRPF40A-204ENST00000450303 WDR62O43379 1518 aa31.11■■■□□ 2.57
PRPF40A-204ENST00000450303 PRDM2Q13029 1718 aa30.99■■■□□ 2.55
PRPF40A-204ENST00000450303 URB2Q14146 1524 aaKnown RBP30.93■■■□□ 2.54
PRPF40A-204ENST00000450303 SUPT5HO00267 1087 aaKnown RBP30.76■■■□□ 2.51
PRPF40A-204ENST00000450303 TOPBP1Q92547 1522 aa30.66■■■□□ 2.5
PRPF40A-204ENST00000450303 ABCC8Q09428 1581 aa30.56■■■□□ 2.48
PRPF40A-204ENST00000450303 DNMBPQ6XZF7 1577 aa30.56■■■□□ 2.48
PRPF40A-204ENST00000450303 IFT140Q96RY7 1462 aa30.53■■■□□ 2.48
PRPF40A-204ENST00000450303 ZNF608Q9ULD9 1512 aaPredicted RBP30.51■■■□□ 2.47
PRPF40A-204ENST00000450303 POLA1P09884 1462 aaPredicted RBP30.36■■■□□ 2.45
PRPF40A-204ENST00000450303 OSCARQ8IYS5 282 aa30.35■■■□□ 2.45
PRPF40A-204ENST00000450303 TARBP1Q13395 1621 aaKnown RBP30.35■■■□□ 2.45
PRPF40A-204ENST00000450303 EIF4G3O43432 1585 aaKnown RBP30.32■■■□□ 2.45
PRPF40A-204ENST00000450303 RAD54L2Q9Y4B4 1467 aa30.3■■■□□ 2.44
PRPF40A-204ENST00000450303 CUX1P39880 1505 aa30.29■■■□□ 2.44
PRPF40A-204ENST00000450303 AQRO60306 1485 aaKnown RBP eCLIP30.29■■■□□ 2.446e-17■■■■□ 23.7
PRPF40A-204ENST00000450303 SOGA1O94964 1423 aa30.26■■■□□ 2.43
PRPF40A-204ENST00000450303 FGD5Q6ZNL6 1462 aa30.25■■■□□ 2.43
PRPF40A-204ENST00000450303 TDRD9Q8NDG6 1382 aaKnown RBP30.18■■■□□ 2.42
PRPF40A-204ENST00000450303 TRIM41Q8WV44 630 aa30.14■■■□□ 2.42
PRPF40A-204ENST00000450303 FBLN2P98095 1184 aa30.07■■■□□ 2.4
PRPF40A-204ENST00000450303 CHD1O14646 1710 aa30.07■■■□□ 2.4
PRPF40A-204ENST00000450303 WDR97A6NE52 1622 aa29.99■■■□□ 2.39
PRPF40A-204ENST00000450303 SNAPC4Q5SXM2 1469 aa29.97■■■□□ 2.39
PRPF40A-204ENST00000450303 WRNQ14191 1432 aaPredicted RBP eCLIP29.93■■■□□ 2.38
PRPF40A-204ENST00000450303 RIMBP3CA6NJZ7 1639 aa29.92■■■□□ 2.38
PRPF40A-204ENST00000450303 RIMBP3BA6NNM3 1639 aa29.92■■■□□ 2.38
PRPF40A-204ENST00000450303 RIMBP3Q9UFD9 1639 aa29.92■■■□□ 2.38
PRPF40A-204ENST00000450303 GRIN2BQ13224 1484 aa29.91■■■□□ 2.38
PRPF40A-204ENST00000450303 SYNJ1O43426 1573 aa29.9■■■□□ 2.38
PRPF40A-204ENST00000450303 ABCA10Q8WWZ4 1543 aa29.89■■■□□ 2.38
PRPF40A-204ENST00000450303 TOP2BQ02880 1626 aa29.89■■■□□ 2.37
PRPF40A-204ENST00000450303 BIVM-ERCC5R4GMW8 1640 aa29.89■■■□□ 2.37
PRPF40A-204ENST00000450303 GAPVD1Q14C86 1478 aa29.88■■■□□ 2.37
PRPF40A-204ENST00000450303 PBRM1Q86U86 1689 aa29.86■■■□□ 2.37
PRPF40A-204ENST00000450303 CHMP7Q8WUX9 453 aaPredicted RBP29.86■■■□□ 2.37
PRPF40A-204ENST00000450303 MAGI1Q96QZ7 1491 aaPredicted RBP29.85■■■□□ 2.37
PRPF40A-204ENST00000450303 ARHGEF11O15085 1522 aa29.84■■■□□ 2.37
PRPF40A-204ENST00000450303 ABCA5Q8WWZ7 1642 aa29.82■■■□□ 2.36
PRPF40A-204ENST00000450303 SYNJ2O15056 1496 aa29.76■■■□□ 2.35
PRPF40A-204ENST00000450303 CYB5RLQ6IPT4 315 aa29.67■■■□□ 2.34
PRPF40A-204ENST00000450303 CLASP1Q7Z460 1538 aa29.66■■■□□ 2.34
PRPF40A-204ENST00000450303 ARAP1Q96P48 1450 aa29.58■■■□□ 2.33
PRPF40A-204ENST00000450303 ADAMTS12P58397 1594 aa29.56■■■□□ 2.32
PRPF40A-204ENST00000450303 GRIN2AQ12879 1464 aa29.53■■■□□ 2.32
PRPF40A-204ENST00000450303 ERICH3Q5RHP9 1530 aa29.5■■■□□ 2.31
PRPF40A-204ENST00000450303 FHAD1B1AJZ9 1412 aa29.5■■■□□ 2.31
PRPF40A-204ENST00000450303 CEP170Q5SW79 1584 aa29.43■■■□□ 2.3
PRPF40A-204ENST00000450303 NUP160Q12769 1436 aa29.39■■■□□ 2.3
PRPF40A-204ENST00000450303 KIF27Q86VH2 1401 aa29.32■■■□□ 2.28
PRPF40A-204ENST00000450303 ERCC6L2Q5T890 1561 aa29.31■■■□□ 2.28
PRPF40A-204ENST00000450303 IGF1RP08069 1367 aa29.28■■■□□ 2.28
PRPF40A-204ENST00000450303 TRHP20396 242 aaPredicted RBP29.23■■■□□ 2.27
PRPF40A-204ENST00000450303 SHROOM2Q13796 1616 aa29.23■■■□□ 2.27
PRPF40A-204ENST00000450303 JPH4Q96JJ6 628 aa29.17■■■□□ 2.26
PRPF40A-204ENST00000450303 CUL7Q14999 1698 aa29.17■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms