RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 NISCHQ9Y2I1 1504 aa36.27■■■■□ 3.4
PRPF40A-201ENST00000354363 CCDC180Q9P1Z9 1646 aa32.57■■■□□ 2.8
PRPF40A-201ENST00000354363 ABCC9O60706 1549 aa32.46■■■□□ 2.79
PRPF40A-201ENST00000354363 RB1CC1Q8TDY2 1594 aa30.94■■■□□ 2.54
PRPF40A-201ENST00000354363 NACADO15069 1562 aa30.74■■■□□ 2.51
PRPF40A-201ENST00000354363 DCAF8L2P0C7V8 631 aa30.54■■■□□ 2.48
PRPF40A-201ENST00000354363 DNAJC5BQ9UF47 199 aa30.39■■■□□ 2.46
PRPF40A-201ENST00000354363 UNC13AQ9UPW8 1703 aa30.34■■■□□ 2.45
PRPF40A-201ENST00000354363 MYO15BQ96JP2 1530 aa30.33■■■□□ 2.45
PRPF40A-201ENST00000354363 PABPN1Q86U42 306 aaKnown RBP eCLIP30.2■■■□□ 2.43
PRPF40A-201ENST00000354363 ZCCHC6Q5VYS8 1495 aaKnown RBP30.08■■■□□ 2.41
PRPF40A-201ENST00000354363 BICRAQ9NZM4 1560 aa30.06■■■□□ 2.4
PRPF40A-201ENST00000354363 DCAF1Q9Y4B6 1507 aa29.97■■■□□ 2.39
PRPF40A-201ENST00000354363 SCRIBQ14160 1630 aa29.65■■■□□ 2.34
PRPF40A-201ENST00000354363 SHROOM4Q9ULL8 1493 aa29.62■■■□□ 2.33
PRPF40A-201ENST00000354363 CC2D2AQ9P2K1 1620 aa29.35■■■□□ 2.29
PRPF40A-201ENST00000354363 EIF4G1Q04637 1599 aaKnown RBP29.29■■■□□ 2.28
PRPF40A-201ENST00000354363 CECR2Q9BXF3 1484 aa29.22■■■□□ 2.27
PRPF40A-201ENST00000354363 NCAPD3P42695 1498 aa28.36■■■□□ 2.13
PRPF40A-201ENST00000354363 SMARCA4P51532 1647 aa28.31■■■□□ 2.12
PRPF40A-201ENST00000354363 ATAD2BQ9ULI0 1458 aa28.29■■■□□ 2.12
PRPF40A-201ENST00000354363 SMARCA2P51531 1590 aa28.22■■■□□ 2.11
PRPF40A-201ENST00000354363 HMGXB3Q12766 1538 aa28.17■■■□□ 2.1
PRPF40A-201ENST00000354363 BAZ1AQ9NRL2 1556 aaPredicted RBP28.15■■■□□ 2.1
PRPF40A-201ENST00000354363 PEG3Q9GZU2 1588 aa28.02■■■□□ 2.08
PRPF40A-201ENST00000354363 BAZ1BQ9UIG0 1483 aaKnown RBP28.02■■■□□ 2.08
PRPF40A-201ENST00000354363 ERCC6Q03468 1493 aa28■■■□□ 2.07
PRPF40A-201ENST00000354363 MROH2BQ7Z745 1585 aa27.95■■■□□ 2.07
PRPF40A-201ENST00000354363 CUX2O14529 1486 aa27.95■■■□□ 2.06
PRPF40A-201ENST00000354363 NESP48681 1621 aa27.91■■■□□ 2.06
PRPF40A-201ENST00000354363 DNAJC5Q9H3Z4 198 aa27.85■■■□□ 2.05
PRPF40A-201ENST00000354363 LAMC3Q9Y6N6 1575 aa27.74■■■□□ 2.03
PRPF40A-201ENST00000354363 WIZO95785 1651 aa27.65■■■□□ 2.02
PRPF40A-201ENST00000354363 THOC2Q8NI27 1593 aaKnown RBP27.64■■■□□ 2.02
PRPF40A-201ENST00000354363 KIF21AQ7Z4S6 1674 aa27.61■■■□□ 2.01
PRPF40A-201ENST00000354363 PDS5BQ9NTI5 1447 aa27.53■■■□□ 2
PRPF40A-201ENST00000354363 CADPSQ9ULU8 1353 aa27.49■■□□□ 1.99
PRPF40A-201ENST00000354363 RSF1Q96T23 1441 aaPredicted RBP27.38■■□□□ 1.97
PRPF40A-201ENST00000354363 MRC2Q9UBG0 1479 aa27.31■■□□□ 1.96
PRPF40A-201ENST00000354363 TOP2AP11388 1531 aaKnown RBP27.28■■□□□ 1.96
PRPF40A-201ENST00000354363 WDR62O43379 1518 aa27.26■■□□□ 1.95
PRPF40A-201ENST00000354363 CEP164Q9UPV0 1460 aa27.21■■□□□ 1.95
PRPF40A-201ENST00000354363 CFTRP13569 1480 aa27.2■■□□□ 1.95
PRPF40A-201ENST00000354363 FANCD2Q9BXW9 1451 aa27.19■■□□□ 1.94
PRPF40A-201ENST00000354363 PRDM2Q13029 1718 aa27.05■■□□□ 1.92
PRPF40A-201ENST00000354363 URB2Q14146 1524 aaKnown RBP26.98■■□□□ 1.91
PRPF40A-201ENST00000354363 CCDC88BA6NC98 1476 aa26.96■■□□□ 1.91
PRPF40A-201ENST00000354363 TOPBP1Q92547 1522 aa26.7■■□□□ 1.86
PRPF40A-201ENST00000354363 IFT140Q96RY7 1462 aa26.67■■□□□ 1.86
PRPF40A-201ENST00000354363 OSCARQ8IYS5 282 aa26.65■■□□□ 1.86
PRPF40A-201ENST00000354363 TRIM41Q8WV44 630 aa26.65■■□□□ 1.86
PRPF40A-201ENST00000354363 ABCC8Q09428 1581 aa26.63■■□□□ 1.85
PRPF40A-201ENST00000354363 ZNF608Q9ULD9 1512 aaPredicted RBP26.63■■□□□ 1.85
PRPF40A-201ENST00000354363 DNMBPQ6XZF7 1577 aa26.61■■□□□ 1.85
PRPF40A-201ENST00000354363 EIF4G3O43432 1585 aaKnown RBP26.51■■□□□ 1.83
PRPF40A-201ENST00000354363 TARBP1Q13395 1621 aaKnown RBP26.48■■□□□ 1.83
PRPF40A-201ENST00000354363 POLA1P09884 1462 aaPredicted RBP26.42■■□□□ 1.82
PRPF40A-201ENST00000354363 AQRO60306 1485 aaKnown RBP eCLIP26.38■■□□□ 1.812e-7■■■■■ 31.9
PRPF40A-201ENST00000354363 RIMBP3CA6NJZ7 1639 aa26.37■■□□□ 1.81
PRPF40A-201ENST00000354363 RIMBP3BA6NNM3 1639 aa26.37■■□□□ 1.81
PRPF40A-201ENST00000354363 RIMBP3Q9UFD9 1639 aa26.37■■□□□ 1.81
PRPF40A-201ENST00000354363 CHD1O14646 1710 aa26.34■■□□□ 1.81
PRPF40A-201ENST00000354363 RAD54L2Q9Y4B4 1467 aa26.32■■□□□ 1.8
PRPF40A-201ENST00000354363 SOGA1O94964 1423 aa26.28■■□□□ 1.8
PRPF40A-201ENST00000354363 FGD5Q6ZNL6 1462 aa26.27■■□□□ 1.8
PRPF40A-201ENST00000354363 CUX1P39880 1505 aa26.27■■□□□ 1.8
PRPF40A-201ENST00000354363 ARHGEF11O15085 1522 aa26.26■■□□□ 1.79
PRPF40A-201ENST00000354363 TDRD9Q8NDG6 1382 aaKnown RBP26.22■■□□□ 1.79
PRPF40A-201ENST00000354363 WDR97A6NE52 1622 aa26.2■■□□□ 1.78
PRPF40A-201ENST00000354363 SUPT5HO00267 1087 aaKnown RBP26.18■■□□□ 1.78
PRPF40A-201ENST00000354363 FBLN2P98095 1184 aa26.17■■□□□ 1.78
PRPF40A-201ENST00000354363 SNAPC4Q5SXM2 1469 aa26.13■■□□□ 1.77
PRPF40A-201ENST00000354363 GRIN2BQ13224 1484 aa26.06■■□□□ 1.76
PRPF40A-201ENST00000354363 MAGI1Q96QZ7 1491 aaPredicted RBP26.06■■□□□ 1.76
PRPF40A-201ENST00000354363 CYB5RLQ6IPT4 315 aa26.03■■□□□ 1.76
PRPF40A-201ENST00000354363 PBRM1Q86U86 1689 aa26.03■■□□□ 1.76
PRPF40A-201ENST00000354363 ARAP1Q96P48 1450 aa26.02■■□□□ 1.76
PRPF40A-201ENST00000354363 CLASP1Q7Z460 1538 aa26■■□□□ 1.75
PRPF40A-201ENST00000354363 CHMP7Q8WUX9 453 aaPredicted RBP25.99■■□□□ 1.75
PRPF40A-201ENST00000354363 SYNJ1O43426 1573 aa25.98■■□□□ 1.75
PRPF40A-201ENST00000354363 ABCA10Q8WWZ4 1543 aa25.98■■□□□ 1.75
PRPF40A-201ENST00000354363 GAPVD1Q14C86 1478 aa25.98■■□□□ 1.75
PRPF40A-201ENST00000354363 SYNJ2O15056 1496 aa25.97■■□□□ 1.75
PRPF40A-201ENST00000354363 ABCA5Q8WWZ7 1642 aa25.95■■□□□ 1.75
PRPF40A-201ENST00000354363 BIVM-ERCC5R4GMW8 1640 aa25.89■■□□□ 1.73
PRPF40A-201ENST00000354363 TOP2BQ02880 1626 aa25.87■■□□□ 1.73
PRPF40A-201ENST00000354363 WRNQ14191 1432 aaPredicted RBP eCLIP25.86■■□□□ 1.73
PRPF40A-201ENST00000354363 ADAMTS12P58397 1594 aa25.74■■□□□ 1.71
PRPF40A-201ENST00000354363 GRIN2AQ12879 1464 aa25.73■■□□□ 1.71
PRPF40A-201ENST00000354363 TRHP20396 242 aaPredicted RBP25.71■■□□□ 1.71
PRPF40A-201ENST00000354363 ERICH3Q5RHP9 1530 aa25.66■■□□□ 1.7
PRPF40A-201ENST00000354363 CEP170Q5SW79 1584 aa25.65■■□□□ 1.7
PRPF40A-201ENST00000354363 FHAD1B1AJZ9 1412 aa25.64■■□□□ 1.7
PRPF40A-201ENST00000354363 NUP160Q12769 1436 aa25.64■■□□□ 1.7
PRPF40A-201ENST00000354363 ERCC6L2Q5T890 1561 aa25.6■■□□□ 1.69
PRPF40A-201ENST00000354363 SHROOM2Q13796 1616 aa25.56■■□□□ 1.68
PRPF40A-201ENST00000354363 RUSC2Q8N2Y8 1516 aa25.38■■□□□ 1.65
PRPF40A-201ENST00000354363 PRG4Q92954 1404 aaPredicted RBP25.38■■□□□ 1.65
PRPF40A-201ENST00000354363 JPH4Q96JJ6 628 aa25.36■■□□□ 1.65
PRPF40A-201ENST00000354363 KIF27Q86VH2 1401 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms