Protein–RNA interactions for Protein: Q4JDL3

PTPN20, Tyrosine-protein phosphatase non-receptor type 20, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20Q4JDL3 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 AC104640.1-201ENST00000562617 2109 ntBASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 CYMP-203ENST00000474680 1263 ntBASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 AC004890.2-204ENST00000481968 304 ntBASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 AC009407.1-201ENST00000568958 598 ntBASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN20Q4JDL3 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 SDHAP3-202ENST00000515467 728 ntBASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.6■□□□□ 0.25
PTPN20Q4JDL3 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 LINC00554-201ENST00000564841 3011 ntBASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 AC112693.3-201ENST00000624819 1983 ntBASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.59■□□□□ 0.25
PTPN20Q4JDL3 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms