Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 PMS2P7-201ENST00000506558 1336 ntBASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 AL591424.1-201ENST00000442569 1213 ntBASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 AC018845.2-201ENST00000568326 409 ntBASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PPP4R4Q6NUP7 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 AC023274.1-201ENST00000418278 595 ntBASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 VN2R19P-201ENST00000442399 1052 ntBASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 AL592424.1-201ENST00000563624 1536 ntBASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 MPDU1-223ENST00000582151 728 ntBASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 AC007191.1-201ENST00000623179 2995 ntBASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PPP4R4Q6NUP7 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms