RNA–Protein interactions for RNA: ENST00000616973.4

NR1H3-235, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1H3, Length 1,919 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-235ENST00000616973 NISCHQ9Y2I1 1504 aa34.42■■■■□ 3.1
NR1H3-235ENST00000616973 CCDC180Q9P1Z9 1646 aa29.81■■■□□ 2.36
NR1H3-235ENST00000616973 ZCCHC6Q5VYS8 1495 aaKnown RBP29.03■■■□□ 2.24
NR1H3-235ENST00000616973 DCAF1Q9Y4B6 1507 aa28.49■■■□□ 2.15
NR1H3-235ENST00000616973 SHROOM4Q9ULL8 1493 aa28.39■■■□□ 2.14
NR1H3-235ENST00000616973 DCAF8L2P0C7V8 631 aa28.13■■■□□ 2.09
NR1H3-235ENST00000616973 MYO15BQ96JP2 1530 aa27.93■■■□□ 2.06
NR1H3-235ENST00000616973 ABCC9O60706 1549 aa27.59■■■□□ 2.01
NR1H3-235ENST00000616973 SUPT5HO00267 1087 aaKnown RBP27.59■■■□□ 2.01
NR1H3-235ENST00000616973 NACADO15069 1562 aa27.59■■■□□ 2.01
NR1H3-235ENST00000616973 SCRIBQ14160 1630 aa27.43■■□□□ 1.98
NR1H3-235ENST00000616973 RB1CC1Q8TDY2 1594 aa27.22■■□□□ 1.95
NR1H3-235ENST00000616973 RSF1Q96T23 1441 aaPredicted RBP26.9■■□□□ 1.9
NR1H3-235ENST00000616973 UNC13AQ9UPW8 1703 aa26.8■■□□□ 1.88
NR1H3-235ENST00000616973 CHIC1Q5VXU3 224 aa26.75■■□□□ 1.87
NR1H3-235ENST00000616973 CECR2Q9BXF3 1484 aa26.67■■□□□ 1.86
NR1H3-235ENST00000616973 MROH2BQ7Z745 1585 aa26.61■■□□□ 1.85
NR1H3-235ENST00000616973 BAZ1AQ9NRL2 1556 aaPredicted RBP26.53■■□□□ 1.84
NR1H3-235ENST00000616973 WIZO95785 1651 aa26.45■■□□□ 1.83
NR1H3-235ENST00000616973 BICRAQ9NZM4 1560 aa26.41■■□□□ 1.82
NR1H3-235ENST00000616973 SMARCA4P51532 1647 aa26.36■■□□□ 1.81
NR1H3-235ENST00000616973 TOP2AP11388 1531 aaKnown RBP26.17■■□□□ 1.78
NR1H3-235ENST00000616973 PABPN1Q86U42 306 aaKnown RBP eCLIP26.1■■□□□ 1.77
NR1H3-235ENST00000616973 PEG3Q9GZU2 1588 aa26.03■■□□□ 1.76
NR1H3-235ENST00000616973 EIF4G1Q04637 1599 aaKnown RBP26■■□□□ 1.75
NR1H3-235ENST00000616973 SMARCA2P51531 1590 aa25.95■■□□□ 1.74
NR1H3-235ENST00000616973 TRIM41Q8WV44 630 aa25.91■■□□□ 1.74
NR1H3-235ENST00000616973 CCDC88BA6NC98 1476 aa25.9■■□□□ 1.74
NR1H3-235ENST00000616973 ATAD2BQ9ULI0 1458 aa25.75■■□□□ 1.71
NR1H3-235ENST00000616973 LOC105371045A0A1W2PR82 267 aa25.72■■□□□ 1.71
NR1H3-235ENST00000616973 BAZ1BQ9UIG0 1483 aaKnown RBP25.63■■□□□ 1.69
NR1H3-235ENST00000616973 ABCC8Q09428 1581 aa25.54■■□□□ 1.68
NR1H3-235ENST00000616973 HMGXB3Q12766 1538 aa25.48■■□□□ 1.67
NR1H3-235ENST00000616973 NCAPD3P42695 1498 aa25.44■■□□□ 1.66
NR1H3-235ENST00000616973 FAM9AQ8IZU1 332 aaPredicted RBP25.43■■□□□ 1.66
NR1H3-235ENST00000616973 WRNQ14191 1432 aaPredicted RBP eCLIP25.29■■□□□ 1.64
NR1H3-235ENST00000616973 EEA1Q15075 1411 aa25.25■■□□□ 1.63
NR1H3-235ENST00000616973 SYNJ1O43426 1573 aa25.2■■□□□ 1.62
NR1H3-235ENST00000616973 SOGA1O94964 1423 aa25.15■■□□□ 1.62
NR1H3-235ENST00000616973 PCGF6Q9BYE7 350 aa25.12■■□□□ 1.61
NR1H3-235ENST00000616973 PRDM2Q13029 1718 aa25.07■■□□□ 1.6
NR1H3-235ENST00000616973 TOP2BQ02880 1626 aa25.07■■□□□ 1.6
NR1H3-235ENST00000616973 BIVM-ERCC5R4GMW8 1640 aa25.06■■□□□ 1.6
NR1H3-235ENST00000616973 RUSC2Q8N2Y8 1516 aa25.04■■□□□ 1.6
NR1H3-235ENST00000616973 CC2D2AQ9P2K1 1620 aa25.03■■□□□ 1.6
NR1H3-235ENST00000616973 CFTRP13569 1480 aa25.03■■□□□ 1.6
NR1H3-235ENST00000616973 TRIM26Q12899 539 aaPredicted RBP25.02■■□□□ 1.6
NR1H3-235ENST00000616973 EHMT2Q96KQ7 1210 aa25.02■■□□□ 1.6
NR1H3-235ENST00000616973 CSRNP3Q8WYN3 585 aa25.01■■□□□ 1.59
NR1H3-235ENST00000616973 TNIKQ9UKE5 1360 aa24.94■■□□□ 1.58
NR1H3-235ENST00000616973 KIF21BO75037 1637 aa24.92■■□□□ 1.58
NR1H3-235ENST00000616973 GOLGA3Q08378 1498 aa24.91■■□□□ 1.58
NR1H3-235ENST00000616973 HRCP23327 699 aa24.9■■□□□ 1.58
NR1H3-235ENST00000616973 CEP164Q9UPV0 1460 aa24.85■■□□□ 1.57
NR1H3-235ENST00000616973 CUX1P39880 1505 aa24.85■■□□□ 1.57
NR1H3-235ENST00000616973 CEP162Q5TB80 1403 aa24.84■■□□□ 1.57
NR1H3-235ENST00000616973 CADPSQ9ULU8 1353 aa24.81■■□□□ 1.56
NR1H3-235ENST00000616973 UBTFP17480 764 aaKnown RBP24.71■■□□□ 1.55
NR1H3-235ENST00000616973 ERICH3Q5RHP9 1530 aa24.64■■□□□ 1.54
NR1H3-235ENST00000616973 RAPGEF2Q9Y4G8 1499 aa24.62■■□□□ 1.53
NR1H3-235ENST00000616973 PRXQ9BXM0 1461 aa24.6■■□□□ 1.53
NR1H3-235ENST00000616973 KIF27Q86VH2 1401 aa24.59■■□□□ 1.53
NR1H3-235ENST00000616973 FANCD2Q9BXW9 1451 aa24.54■■□□□ 1.52
NR1H3-235ENST00000616973 CLIP1P30622 1438 aa24.51■■□□□ 1.51
NR1H3-235ENST00000616973 LAMC3Q9Y6N6 1575 aa24.51■■□□□ 1.51
NR1H3-235ENST00000616973 FGD5Q6ZNL6 1462 aa24.47■■□□□ 1.51
NR1H3-235ENST00000616973 DNMBPQ6XZF7 1577 aa24.46■■□□□ 1.51
NR1H3-235ENST00000616973 PPARGC1BQ86YN6 1023 aaKnown RBP24.43■■□□□ 1.5
NR1H3-235ENST00000616973 NESP48681 1621 aa24.41■■□□□ 1.5
NR1H3-235ENST00000616973 CUX2O14529 1486 aa24.4■■□□□ 1.5
NR1H3-235ENST00000616973 VPS8Q8N3P4 1428 aa24.39■■□□□ 1.5
NR1H3-235ENST00000616973 TOPBP1Q92547 1522 aa24.36■■□□□ 1.49
NR1H3-235ENST00000616973 ZEB1P37275 1124 aaPredicted RBP24.32■■□□□ 1.48
NR1H3-235ENST00000616973 IGF1RP08069 1367 aa24.31■■□□□ 1.48
NR1H3-235ENST00000616973 ABCA10Q8WWZ4 1543 aa24.28■■□□□ 1.48
NR1H3-235ENST00000616973 POLA1P09884 1462 aaPredicted RBP24.27■■□□□ 1.48
NR1H3-235ENST00000616973 PDS5BQ9NTI5 1447 aa24.25■■□□□ 1.47
NR1H3-235ENST00000616973 ARAP1Q96P48 1450 aa24.23■■□□□ 1.47
NR1H3-235ENST00000616973 WDR97A6NE52 1622 aa24.22■■□□□ 1.47
NR1H3-235ENST00000616973 URB2Q14146 1524 aaKnown RBP24.22■■□□□ 1.47
NR1H3-235ENST00000616973 KIF21AQ7Z4S6 1674 aa24.21■■□□□ 1.47
NR1H3-235ENST00000616973 CARMIL1Q5VZK9 1371 aa24.2■■□□□ 1.47
NR1H3-235ENST00000616973 RAD54L2Q9Y4B4 1467 aa24.18■■□□□ 1.46
NR1H3-235ENST00000616973 DNAJC5BQ9UF47 199 aa24.16■■□□□ 1.46
NR1H3-235ENST00000616973 CUL7Q14999 1698 aa24.15■■□□□ 1.46
NR1H3-235ENST00000616973 ARHGAP35Q9NRY4 1499 aa24.12■■□□□ 1.45
NR1H3-235ENST00000616973 APLP2Q06481 763 aa24.12■■□□□ 1.45
NR1H3-235ENST00000616973 TTBK1Q5TCY1 1321 aaPredicted RBP24.1■■□□□ 1.45
NR1H3-235ENST00000616973 RANGAP1P46060 587 aaPredicted RBP24.1■■□□□ 1.45
NR1H3-235ENST00000616973 ABCA5Q8WWZ7 1642 aa24.07■■□□□ 1.44
NR1H3-235ENST00000616973 CTTNBP2Q8WZ74 1663 aa24■■□□□ 1.43
NR1H3-235ENST00000616973 TARBP1Q13395 1621 aaKnown RBP23.99■■□□□ 1.43
NR1H3-235ENST00000616973 GAPVD1Q14C86 1478 aa23.94■■□□□ 1.42
NR1H3-235ENST00000616973 MRC2Q9UBG0 1479 aa23.93■■□□□ 1.42
NR1H3-235ENST00000616973 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.92■■□□□ 1.42
NR1H3-235ENST00000616973 MAP3K1Q13233 1512 aa23.92■■□□□ 1.42
NR1H3-235ENST00000616973 EFCAB5A4FU69 1503 aa23.91■■□□□ 1.42
NR1H3-235ENST00000616973 CCER1Q8TC90 406 aaPredicted RBP23.9■■□□□ 1.42
NR1H3-235ENST00000616973 TDRD9Q8NDG6 1382 aaKnown RBP23.87■■□□□ 1.41
NR1H3-235ENST00000616973 PBRM1Q86U86 1689 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 1089.6 ms