Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 IPPK-202ENST00000375522 882 ntTSL 3 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 MRPL20P1-201ENST00000400819 433 ntBASIC14.17□□□□□ -0.14
RFT1Q96AA3 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 AC108073.2-201ENST00000464002 357 ntBASIC14.17□□□□□ -0.14
RFT1Q96AA3 MOK-208ENST00000519058 917 ntTSL 2 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 AC004790.2-201ENST00000623588 572 ntBASIC14.17□□□□□ -0.14
RFT1Q96AA3 AC005593.1-201ENST00000624894 515 ntBASIC14.17□□□□□ -0.14
RFT1Q96AA3 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.17□□□□□ -0.14
RFT1Q96AA3 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFT1Q96AA3 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 AC012569.1-201ENST00000591191 1524 ntBASIC14.16□□□□□ -0.14
RFT1Q96AA3 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 AC010654.1-201ENST00000615722 808 ntBASIC14.16□□□□□ -0.14
RFT1Q96AA3 AC148477.8-201ENST00000624298 468 ntBASIC14.16□□□□□ -0.14
RFT1Q96AA3 PGM5P2-202ENST00000637225 1043 ntBASIC14.16□□□□□ -0.14
RFT1Q96AA3 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
RFT1Q96AA3 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFT1Q96AA3 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.15□□□□□ -0.14
RFT1Q96AA3 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RFT1Q96AA3 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RFT1Q96AA3 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.15□□□□□ -0.14
RFT1Q96AA3 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RFT1Q96AA3 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RFT1Q96AA3 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
RFT1Q96AA3 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms