Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHA3Q9Y5H8 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHA3Q9Y5H8 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC24.57■■□□□ 1.52
PCDHA3Q9Y5H8 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA3Q9Y5H8 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA3Q9Y5H8 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
PCDHA3Q9Y5H8 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC24.56■■□□□ 1.52
PCDHA3Q9Y5H8 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA3Q9Y5H8 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA3Q9Y5H8 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA3Q9Y5H8 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC24.55■■□□□ 1.52
PCDHA3Q9Y5H8 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA3Q9Y5H8 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC24.55■■□□□ 1.52
PCDHA3Q9Y5H8 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC24.55■■□□□ 1.52
PCDHA3Q9Y5H8 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA3Q9Y5H8 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHA3Q9Y5H8 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC24.54■■□□□ 1.52
PCDHA3Q9Y5H8 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHA3Q9Y5H8 AC004812.2-201ENST00000611079 2094 ntBASIC24.54■■□□□ 1.52
PCDHA3Q9Y5H8 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHA3Q9Y5H8 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHA3Q9Y5H8 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
PCDHA3Q9Y5H8 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC24.54■■□□□ 1.52
PCDHA3Q9Y5H8 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHA3Q9Y5H8 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC24.54■■□□□ 1.52
PCDHA3Q9Y5H8 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHA3Q9Y5H8 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHA3Q9Y5H8 FOXO3B-201ENST00000395675 1928 ntBASIC24.53■■□□□ 1.52
PCDHA3Q9Y5H8 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHA3Q9Y5H8 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
PCDHA3Q9Y5H8 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
PCDHA3Q9Y5H8 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
PCDHA3Q9Y5H8 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
PCDHA3Q9Y5H8 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.52■■□□□ 1.52
PCDHA3Q9Y5H8 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
PCDHA3Q9Y5H8 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PCDHA3Q9Y5H8 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHA3Q9Y5H8 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHA3Q9Y5H8 MBP-237ENST00000579129 1052 ntTSL 5 BASIC24.51■■□□□ 1.51
PCDHA3Q9Y5H8 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHA3Q9Y5H8 HLA-L-211ENST00000482052 1765 ntBASIC24.51■■□□□ 1.51
PCDHA3Q9Y5H8 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
PCDHA3Q9Y5H8 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PCDHA3Q9Y5H8 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHA3Q9Y5H8 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHA3Q9Y5H8 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC24.5■■□□□ 1.51
PCDHA3Q9Y5H8 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHA3Q9Y5H8 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
PCDHA3Q9Y5H8 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHA3Q9Y5H8 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHA3Q9Y5H8 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHA3Q9Y5H8 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.5■■□□□ 1.51
PCDHA3Q9Y5H8 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PCDHA3Q9Y5H8 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC24.5■■□□□ 1.51
PCDHA3Q9Y5H8 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC24.49■■□□□ 1.51
PCDHA3Q9Y5H8 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
PCDHA3Q9Y5H8 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
PCDHA3Q9Y5H8 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
PCDHA3Q9Y5H8 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC24.49■■□□□ 1.51
PCDHA3Q9Y5H8 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
PCDHA3Q9Y5H8 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
PCDHA3Q9Y5H8 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PCDHA3Q9Y5H8 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.49■■□□□ 1.51
PCDHA3Q9Y5H8 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PCDHA3Q9Y5H8 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC24.48■■□□□ 1.51
PCDHA3Q9Y5H8 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
PCDHA3Q9Y5H8 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 AC009831.1-201ENST00000580420 1582 ntBASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 HES4-204ENST00000484667 667 ntTSL 3 BASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
PCDHA3Q9Y5H8 CASK-201ENST00000378154 2494 ntTSL 5 BASIC24.46■■□□□ 1.51
PCDHA3Q9Y5H8 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC24.46■■□□□ 1.51
PCDHA3Q9Y5H8 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PCDHA3Q9Y5H8 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC24.46■■□□□ 1.51
PCDHA3Q9Y5H8 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
PCDHA3Q9Y5H8 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PCDHA3Q9Y5H8 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC24.46■■□□□ 1.51
PCDHA3Q9Y5H8 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
PCDHA3Q9Y5H8 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PCDHA3Q9Y5H8 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC24.46■■□□□ 1.51
PCDHA3Q9Y5H8 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
PCDHA3Q9Y5H8 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC24.45■■□□□ 1.51
PCDHA3Q9Y5H8 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA3Q9Y5H8 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA3Q9Y5H8 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.45■■□□□ 1.5
PCDHA3Q9Y5H8 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA3Q9Y5H8 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA3Q9Y5H8 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC24.45■■□□□ 1.5
PCDHA3Q9Y5H8 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA3Q9Y5H8 SHD-204ENST00000599689 1729 ntTSL 5 BASIC24.44■■□□□ 1.5
PCDHA3Q9Y5H8 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
PCDHA3Q9Y5H8 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms