Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
COL5A3P25940 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC30.22■■■□□ 2.43
COL5A3P25940 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC30.22■■■□□ 2.43
COL5A3P25940 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL5A3P25940 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL5A3P25940 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL5A3P25940 FOXO3B-201ENST00000395675 1928 ntBASIC30.21■■■□□ 2.43
COL5A3P25940 AC026271.2-201ENST00000428091 497 ntBASIC30.21■■■□□ 2.43
COL5A3P25940 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL5A3P25940 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
COL5A3P25940 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
COL5A3P25940 EBPL-204ENST00000378272 766 ntTSL 3 BASIC30.19■■■□□ 2.42
COL5A3P25940 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC30.19■■■□□ 2.42
COL5A3P25940 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC30.19■■■□□ 2.42
COL5A3P25940 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC30.19■■■□□ 2.42
COL5A3P25940 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC30.19■■■□□ 2.42
COL5A3P25940 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
COL5A3P25940 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC30.19■■■□□ 2.42
COL5A3P25940 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
COL5A3P25940 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC30.19■■■□□ 2.42
COL5A3P25940 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL5A3P25940 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL5A3P25940 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
COL5A3P25940 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
COL5A3P25940 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
COL5A3P25940 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL5A3P25940 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL5A3P25940 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
COL5A3P25940 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC30.16■■■□□ 2.42
COL5A3P25940 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC30.16■■■□□ 2.42
COL5A3P25940 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC30.16■■■□□ 2.42
COL5A3P25940 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL5A3P25940 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL5A3P25940 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL5A3P25940 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL5A3P25940 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
COL5A3P25940 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
COL5A3P25940 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC30.14■■■□□ 2.42
COL5A3P25940 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC30.14■■■□□ 2.41
COL5A3P25940 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC30.14■■■□□ 2.41
COL5A3P25940 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC30.13■■■□□ 2.41
COL5A3P25940 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL5A3P25940 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
COL5A3P25940 LGR4-203ENST00000480977 492 ntTSL 2 BASIC30.13■■■□□ 2.41
COL5A3P25940 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL5A3P25940 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
COL5A3P25940 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL5A3P25940 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC30.12■■■□□ 2.41
COL5A3P25940 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC30.11■■■□□ 2.41
COL5A3P25940 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC30.11■■■□□ 2.41
COL5A3P25940 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
COL5A3P25940 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL5A3P25940 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
COL5A3P25940 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL5A3P25940 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL5A3P25940 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL5A3P25940 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC30.1■■■□□ 2.41
COL5A3P25940 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
COL5A3P25940 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL5A3P25940 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
COL5A3P25940 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC30.09■■■□□ 2.41
COL5A3P25940 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC30.09■■■□□ 2.41
COL5A3P25940 AC135279.3-201ENST00000610945 1311 ntBASIC30.09■■■□□ 2.41
COL5A3P25940 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC30.08■■■□□ 2.41
COL5A3P25940 MIR6722-201ENST00000617286 78 ntBASIC30.08■■■□□ 2.41
COL5A3P25940 AC096887.2-201ENST00000623443 1957 ntBASIC30.08■■■□□ 2.41
COL5A3P25940 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL5A3P25940 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL5A3P25940 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC30.07■■■□□ 2.4
COL5A3P25940 AC142381.2-201ENST00000566120 298 ntBASIC30.07■■■□□ 2.4
COL5A3P25940 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC30.07■■■□□ 2.4
COL5A3P25940 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL5A3P25940 AC142086.6-201ENST00000621154 1765 ntBASIC30.06■■■□□ 2.4
COL5A3P25940 PBX2P1-201ENST00000493219 1291 ntBASIC30.06■■■□□ 2.4
COL5A3P25940 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC30.06■■■□□ 2.4
COL5A3P25940 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC30.06■■■□□ 2.4
COL5A3P25940 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
COL5A3P25940 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
COL5A3P25940 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC30.05■■■□□ 2.4
COL5A3P25940 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC30.05■■■□□ 2.4
COL5A3P25940 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC30.05■■■□□ 2.4
COL5A3P25940 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC30.05■■■□□ 2.4
COL5A3P25940 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL5A3P25940 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL5A3P25940 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
COL5A3P25940 AC090877.2-201ENST00000558441 1738 ntBASIC30.05■■■□□ 2.4
COL5A3P25940 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
COL5A3P25940 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
COL5A3P25940 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC30.05■■■□□ 2.4
COL5A3P25940 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
COL5A3P25940 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL5A3P25940 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL5A3P25940 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC30.04■■■□□ 2.4
COL5A3P25940 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL5A3P25940 UNC93B3-201ENST00000308076 687 ntBASIC30.03■■■□□ 2.4
COL5A3P25940 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC30.03■■■□□ 2.4
COL5A3P25940 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC30.03■■■□□ 2.4
COL5A3P25940 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC30.03■■■□□ 2.4
COL5A3P25940 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
COL5A3P25940 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms