Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.79■■■□□ 2.68
RC3H2Q9HBD1 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.79■■■□□ 2.68
RC3H2Q9HBD1 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RC3H2Q9HBD1 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.78■■■□□ 2.68
RC3H2Q9HBD1 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
RC3H2Q9HBD1 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.75■■■□□ 2.67
RC3H2Q9HBD1 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
RC3H2Q9HBD1 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.7■■■□□ 2.67
RC3H2Q9HBD1 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.65■■■□□ 2.66
RC3H2Q9HBD1 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.65■■■□□ 2.66
RC3H2Q9HBD1 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.64■■■□□ 2.66
RC3H2Q9HBD1 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.63■■■□□ 2.65
RC3H2Q9HBD1 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
RC3H2Q9HBD1 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
RC3H2Q9HBD1 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.57■■■□□ 2.64
RC3H2Q9HBD1 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.56■■■□□ 2.64
RC3H2Q9HBD1 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
RC3H2Q9HBD1 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.54■■■□□ 2.64
RC3H2Q9HBD1 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
RC3H2Q9HBD1 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC31.5■■■□□ 2.63
RC3H2Q9HBD1 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.49■■■□□ 2.63
RC3H2Q9HBD1 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.49■■■□□ 2.63
RC3H2Q9HBD1 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
RC3H2Q9HBD1 RARRES2P7-201ENST00000567349 469 ntBASIC31.45■■■□□ 2.63
RC3H2Q9HBD1 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.4■■■□□ 2.62
RC3H2Q9HBD1 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.39■■■□□ 2.62
RC3H2Q9HBD1 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RC3H2Q9HBD1 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.34■■■□□ 2.61
RC3H2Q9HBD1 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
RC3H2Q9HBD1 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC31.31■■■□□ 2.6
RC3H2Q9HBD1 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.3■■■□□ 2.6
RC3H2Q9HBD1 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.28■■■□□ 2.6
RC3H2Q9HBD1 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.27■■■□□ 2.6
RC3H2Q9HBD1 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.27■■■□□ 2.6
RC3H2Q9HBD1 AC136428.2-201ENST00000563187 214 ntBASIC31.26■■■□□ 2.59
RC3H2Q9HBD1 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC31.25■■■□□ 2.59
RC3H2Q9HBD1 AC097358.2-201ENST00000607541 1159 ntBASIC31.23■■■□□ 2.59
RC3H2Q9HBD1 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
RC3H2Q9HBD1 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.19■■■□□ 2.58
RC3H2Q9HBD1 SETD8P1-201ENST00000623146 1180 ntBASIC31.19■■■□□ 2.58
RC3H2Q9HBD1 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.19■■■□□ 2.58
RC3H2Q9HBD1 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
RC3H2Q9HBD1 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.14■■■□□ 2.58
RC3H2Q9HBD1 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
RC3H2Q9HBD1 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.13■■■□□ 2.57
RC3H2Q9HBD1 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
RC3H2Q9HBD1 SUZ12P1-203ENST00000578195 985 ntBASIC31.11■■■□□ 2.57
RC3H2Q9HBD1 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
RC3H2Q9HBD1 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.08■■■□□ 2.57
RC3H2Q9HBD1 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.06■■■□□ 2.56
RC3H2Q9HBD1 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.06■■■□□ 2.56
RC3H2Q9HBD1 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.06■■■□□ 2.56
RC3H2Q9HBD1 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
RC3H2Q9HBD1 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.04■■■□□ 2.56
RC3H2Q9HBD1 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
RC3H2Q9HBD1 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
RC3H2Q9HBD1 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
RC3H2Q9HBD1 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.99■■■□□ 2.55
RC3H2Q9HBD1 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
RC3H2Q9HBD1 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
RC3H2Q9HBD1 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.91■■■□□ 2.54
RC3H2Q9HBD1 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.91■■■□□ 2.54
RC3H2Q9HBD1 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.88■■■□□ 2.53
RC3H2Q9HBD1 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.88■■■□□ 2.53
RC3H2Q9HBD1 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.88■■■□□ 2.53
RC3H2Q9HBD1 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.86■■■□□ 2.53
RC3H2Q9HBD1 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
RC3H2Q9HBD1 AC145285.7-201ENST00000614819 1539 ntBASIC30.85■■■□□ 2.53
RC3H2Q9HBD1 RPS2P35-201ENST00000443417 897 ntBASIC30.85■■■□□ 2.53
RC3H2Q9HBD1 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
RC3H2Q9HBD1 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.82■■■□□ 2.53
RC3H2Q9HBD1 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.79■■■□□ 2.52
RC3H2Q9HBD1 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
RC3H2Q9HBD1 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.77■■■□□ 2.52
RC3H2Q9HBD1 CAHM-201ENST00000604200 896 ntBASIC30.74■■■□□ 2.51
RC3H2Q9HBD1 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.74■■■□□ 2.51
RC3H2Q9HBD1 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
RC3H2Q9HBD1 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RC3H2Q9HBD1 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
RC3H2Q9HBD1 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.67■■■□□ 2.5
RC3H2Q9HBD1 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RC3H2Q9HBD1 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RC3H2Q9HBD1 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.6■■■□□ 2.49
RC3H2Q9HBD1 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RC3H2Q9HBD1 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RC3H2Q9HBD1 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RC3H2Q9HBD1 AL391121.1-201ENST00000607967 1349 ntBASIC30.57■■■□□ 2.48
RC3H2Q9HBD1 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.57■■■□□ 2.48
RC3H2Q9HBD1 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.57■■■□□ 2.48
RC3H2Q9HBD1 AL162393.1-201ENST00000437852 946 ntBASIC30.55■■■□□ 2.48
RC3H2Q9HBD1 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.55■■■□□ 2.48
RC3H2Q9HBD1 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
RC3H2Q9HBD1 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RC3H2Q9HBD1 AL133380.1-201ENST00000506013 324 ntBASIC30.54■■■□□ 2.48
RC3H2Q9HBD1 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.54■■■□□ 2.48
RC3H2Q9HBD1 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
RC3H2Q9HBD1 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
RC3H2Q9HBD1 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
RC3H2Q9HBD1 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.51■■■□□ 2.47
RC3H2Q9HBD1 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms