Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
UPF3AQ9H1J1 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.99■■■□□ 2.87
UPF3AQ9H1J1 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.99■■■□□ 2.87
UPF3AQ9H1J1 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC32.99■■■□□ 2.87
UPF3AQ9H1J1 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.97■■■□□ 2.87
UPF3AQ9H1J1 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
UPF3AQ9H1J1 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
UPF3AQ9H1J1 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.89■■■□□ 2.86
UPF3AQ9H1J1 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.87■■■□□ 2.85
UPF3AQ9H1J1 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.85■■■□□ 2.85
UPF3AQ9H1J1 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC32.83■■■□□ 2.85
UPF3AQ9H1J1 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
UPF3AQ9H1J1 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.79■■■□□ 2.84
UPF3AQ9H1J1 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC32.79■■■□□ 2.84
UPF3AQ9H1J1 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC32.79■■■□□ 2.84
UPF3AQ9H1J1 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC32.78■■■□□ 2.84
UPF3AQ9H1J1 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.76■■■□□ 2.83
UPF3AQ9H1J1 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
UPF3AQ9H1J1 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC32.71■■■□□ 2.83
UPF3AQ9H1J1 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
UPF3AQ9H1J1 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC32.69■■■□□ 2.82
UPF3AQ9H1J1 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC32.68■■■□□ 2.82
UPF3AQ9H1J1 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
UPF3AQ9H1J1 RARRES2P7-201ENST00000567349 469 ntBASIC32.67■■■□□ 2.82
UPF3AQ9H1J1 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC32.66■■■□□ 2.82
UPF3AQ9H1J1 EBPL-203ENST00000378270 579 ntTSL 2 BASIC32.61■■■□□ 2.81
UPF3AQ9H1J1 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC32.58■■■□□ 2.81
UPF3AQ9H1J1 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC32.56■■■□□ 2.8
UPF3AQ9H1J1 ILK-212ENST00000532063 1617 ntTSL 2 BASIC32.55■■■□□ 2.8
UPF3AQ9H1J1 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
UPF3AQ9H1J1 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC32.52■■■□□ 2.8
UPF3AQ9H1J1 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC32.52■■■□□ 2.8
UPF3AQ9H1J1 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC32.51■■■□□ 2.8
UPF3AQ9H1J1 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC32.48■■■□□ 2.79
UPF3AQ9H1J1 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC32.46■■■□□ 2.79
UPF3AQ9H1J1 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC32.44■■■□□ 2.78
UPF3AQ9H1J1 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
UPF3AQ9H1J1 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC32.44■■■□□ 2.78
UPF3AQ9H1J1 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC32.44■■■□□ 2.78
UPF3AQ9H1J1 AC097358.2-201ENST00000607541 1159 ntBASIC32.43■■■□□ 2.78
UPF3AQ9H1J1 AC136428.2-201ENST00000563187 214 ntBASIC32.4■■■□□ 2.78
UPF3AQ9H1J1 SETD8P1-201ENST00000623146 1180 ntBASIC32.37■■■□□ 2.77
UPF3AQ9H1J1 KLF16-203ENST00000592313 508 ntTSL 3 BASIC32.35■■■□□ 2.77
UPF3AQ9H1J1 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC32.34■■■□□ 2.77
UPF3AQ9H1J1 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
UPF3AQ9H1J1 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
UPF3AQ9H1J1 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
UPF3AQ9H1J1 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
UPF3AQ9H1J1 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC32.29■■■□□ 2.76
UPF3AQ9H1J1 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC32.26■■■□□ 2.75
UPF3AQ9H1J1 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC32.26■■■□□ 2.75
UPF3AQ9H1J1 SUZ12P1-203ENST00000578195 985 ntBASIC32.25■■■□□ 2.75
UPF3AQ9H1J1 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
UPF3AQ9H1J1 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
UPF3AQ9H1J1 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC32.19■■■□□ 2.74
UPF3AQ9H1J1 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC32.19■■■□□ 2.74
UPF3AQ9H1J1 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
UPF3AQ9H1J1 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
UPF3AQ9H1J1 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
UPF3AQ9H1J1 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC32.15■■■□□ 2.74
UPF3AQ9H1J1 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
UPF3AQ9H1J1 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC32.13■■■□□ 2.73
UPF3AQ9H1J1 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC32.09■■■□□ 2.73
UPF3AQ9H1J1 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
UPF3AQ9H1J1 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC32.08■■■□□ 2.73
UPF3AQ9H1J1 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC32.08■■■□□ 2.73
UPF3AQ9H1J1 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
UPF3AQ9H1J1 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC32.03■■■□□ 2.72
UPF3AQ9H1J1 MVK-208ENST00000539696 608 ntTSL 5 BASIC32.03■■■□□ 2.72
UPF3AQ9H1J1 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC32.03■■■□□ 2.72
UPF3AQ9H1J1 AC145285.7-201ENST00000614819 1539 ntBASIC32.02■■■□□ 2.72
UPF3AQ9H1J1 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
UPF3AQ9H1J1 RPS2P35-201ENST00000443417 897 ntBASIC32■■■□□ 2.71
UPF3AQ9H1J1 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
UPF3AQ9H1J1 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
UPF3AQ9H1J1 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.95■■■□□ 2.71
UPF3AQ9H1J1 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.88■■■□□ 2.69
UPF3AQ9H1J1 CAHM-201ENST00000604200 896 ntBASIC31.88■■■□□ 2.69
UPF3AQ9H1J1 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.87■■■□□ 2.69
UPF3AQ9H1J1 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
UPF3AQ9H1J1 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.87■■■□□ 2.69
UPF3AQ9H1J1 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
UPF3AQ9H1J1 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
UPF3AQ9H1J1 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
UPF3AQ9H1J1 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
UPF3AQ9H1J1 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.78■■■□□ 2.68
UPF3AQ9H1J1 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.76■■■□□ 2.67
UPF3AQ9H1J1 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
UPF3AQ9H1J1 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
UPF3AQ9H1J1 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
UPF3AQ9H1J1 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
UPF3AQ9H1J1 AL391121.1-201ENST00000607967 1349 ntBASIC31.73■■■□□ 2.67
UPF3AQ9H1J1 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
UPF3AQ9H1J1 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.69■■■□□ 2.66
UPF3AQ9H1J1 AL133380.1-201ENST00000506013 324 ntBASIC31.69■■■□□ 2.66
UPF3AQ9H1J1 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
UPF3AQ9H1J1 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
UPF3AQ9H1J1 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.67■■■□□ 2.66
UPF3AQ9H1J1 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
UPF3AQ9H1J1 AL162393.1-201ENST00000437852 946 ntBASIC31.67■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms