Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
SH3RF1Q7Z6J0 DYNLL1-208ENST00000550178 581 ntBASIC33.27■■■□□ 2.92
SH3RF1Q7Z6J0 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC33.26■■■□□ 2.92
SH3RF1Q7Z6J0 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
SH3RF1Q7Z6J0 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC33.18■■■□□ 2.9
SH3RF1Q7Z6J0 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC33.17■■■□□ 2.9
SH3RF1Q7Z6J0 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC33.17■■■□□ 2.9
SH3RF1Q7Z6J0 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
SH3RF1Q7Z6J0 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
SH3RF1Q7Z6J0 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC33.16■■■□□ 2.9
SH3RF1Q7Z6J0 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
SH3RF1Q7Z6J0 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC33.1■■■□□ 2.89
SH3RF1Q7Z6J0 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
SH3RF1Q7Z6J0 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC33.07■■■□□ 2.88
SH3RF1Q7Z6J0 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
SH3RF1Q7Z6J0 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
SH3RF1Q7Z6J0 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC33.04■■■□□ 2.88
SH3RF1Q7Z6J0 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC33.04■■■□□ 2.88
SH3RF1Q7Z6J0 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
SH3RF1Q7Z6J0 AL031258.1-201ENST00000623562 325 ntBASIC33.01■■■□□ 2.87
SH3RF1Q7Z6J0 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC33■■■□□ 2.87
SH3RF1Q7Z6J0 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.97■■■□□ 2.87
SH3RF1Q7Z6J0 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.96■■■□□ 2.87
SH3RF1Q7Z6J0 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC32.94■■■□□ 2.86
SH3RF1Q7Z6J0 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
SH3RF1Q7Z6J0 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
SH3RF1Q7Z6J0 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.92■■■□□ 2.86
SH3RF1Q7Z6J0 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC32.89■■■□□ 2.86
SH3RF1Q7Z6J0 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.88■■■□□ 2.85
SH3RF1Q7Z6J0 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.88■■■□□ 2.85
SH3RF1Q7Z6J0 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC32.87■■■□□ 2.85
SH3RF1Q7Z6J0 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
SH3RF1Q7Z6J0 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC32.86■■■□□ 2.85
SH3RF1Q7Z6J0 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.85■■■□□ 2.85
SH3RF1Q7Z6J0 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
SH3RF1Q7Z6J0 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
SH3RF1Q7Z6J0 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC32.8■■■□□ 2.84
SH3RF1Q7Z6J0 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
SH3RF1Q7Z6J0 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
SH3RF1Q7Z6J0 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.78■■■□□ 2.84
SH3RF1Q7Z6J0 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
SH3RF1Q7Z6J0 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
SH3RF1Q7Z6J0 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
SH3RF1Q7Z6J0 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.74■■■□□ 2.83
SH3RF1Q7Z6J0 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC32.74■■■□□ 2.83
SH3RF1Q7Z6J0 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC32.72■■■□□ 2.83
SH3RF1Q7Z6J0 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
SH3RF1Q7Z6J0 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.69■■■□□ 2.82
SH3RF1Q7Z6J0 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
SH3RF1Q7Z6J0 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
SH3RF1Q7Z6J0 RARRES2P7-201ENST00000567349 469 ntBASIC32.65■■■□□ 2.82
SH3RF1Q7Z6J0 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC32.65■■■□□ 2.82
SH3RF1Q7Z6J0 AC145285.7-201ENST00000614819 1539 ntBASIC32.63■■■□□ 2.81
SH3RF1Q7Z6J0 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC32.59■■■□□ 2.81
SH3RF1Q7Z6J0 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
SH3RF1Q7Z6J0 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC32.5■■■□□ 2.79
SH3RF1Q7Z6J0 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC32.49■■■□□ 2.79
SH3RF1Q7Z6J0 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC32.48■■■□□ 2.79
SH3RF1Q7Z6J0 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC32.47■■■□□ 2.79
SH3RF1Q7Z6J0 AC097358.2-201ENST00000607541 1159 ntBASIC32.47■■■□□ 2.79
SH3RF1Q7Z6J0 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
SH3RF1Q7Z6J0 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
SH3RF1Q7Z6J0 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
SH3RF1Q7Z6J0 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
SH3RF1Q7Z6J0 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.41■■■□□ 2.78
SH3RF1Q7Z6J0 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
SH3RF1Q7Z6J0 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
SH3RF1Q7Z6J0 AC136428.2-201ENST00000563187 214 ntBASIC32.39■■■□□ 2.78
SH3RF1Q7Z6J0 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC32.39■■■□□ 2.78
SH3RF1Q7Z6J0 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC32.37■■■□□ 2.77
SH3RF1Q7Z6J0 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
SH3RF1Q7Z6J0 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
SH3RF1Q7Z6J0 RPS2P35-201ENST00000443417 897 ntBASIC32.35■■■□□ 2.77
SH3RF1Q7Z6J0 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
SH3RF1Q7Z6J0 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC32.34■■■□□ 2.77
SH3RF1Q7Z6J0 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
SH3RF1Q7Z6J0 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
SH3RF1Q7Z6J0 SUZ12P1-203ENST00000578195 985 ntBASIC32.31■■■□□ 2.76
SH3RF1Q7Z6J0 SETD8P1-201ENST00000623146 1180 ntBASIC32.29■■■□□ 2.76
SH3RF1Q7Z6J0 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
SH3RF1Q7Z6J0 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
SH3RF1Q7Z6J0 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
SH3RF1Q7Z6J0 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
SH3RF1Q7Z6J0 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC32.27■■■□□ 2.76
SH3RF1Q7Z6J0 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC32.26■■■□□ 2.75
SH3RF1Q7Z6J0 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC32.24■■■□□ 2.75
SH3RF1Q7Z6J0 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC32.23■■■□□ 2.75
SH3RF1Q7Z6J0 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC32.2■■■□□ 2.74
SH3RF1Q7Z6J0 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SH3RF1Q7Z6J0 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC32.18■■■□□ 2.74
SH3RF1Q7Z6J0 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC32.18■■■□□ 2.74
SH3RF1Q7Z6J0 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
SH3RF1Q7Z6J0 EBPL-203ENST00000378270 579 ntTSL 2 BASIC32.15■■■□□ 2.74
SH3RF1Q7Z6J0 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
SH3RF1Q7Z6J0 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC32.15■■■□□ 2.74
SH3RF1Q7Z6J0 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
SH3RF1Q7Z6J0 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC32.14■■■□□ 2.74
SH3RF1Q7Z6J0 KLF16-203ENST00000592313 508 ntTSL 3 BASIC32.12■■■□□ 2.73
SH3RF1Q7Z6J0 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
SH3RF1Q7Z6J0 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC32.1■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms