Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC20.21■□□□□ 0.83
VPS13DQ5THJ4 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC20.21■□□□□ 0.83
VPS13DQ5THJ4 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS13DQ5THJ4 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13DQ5THJ4 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13DQ5THJ4 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
VPS13DQ5THJ4 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VPS13DQ5THJ4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13DQ5THJ4 RARRES2P7-201ENST00000567349 469 ntBASIC20.14■□□□□ 0.81
VPS13DQ5THJ4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC20.13■□□□□ 0.81
VPS13DQ5THJ4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS13DQ5THJ4 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS13DQ5THJ4 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
VPS13DQ5THJ4 AC136428.2-201ENST00000563187 214 ntBASIC20.1■□□□□ 0.81
VPS13DQ5THJ4 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS13DQ5THJ4 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
VPS13DQ5THJ4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS13DQ5THJ4 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS13DQ5THJ4 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS13DQ5THJ4 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
VPS13DQ5THJ4 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
VPS13DQ5THJ4 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC20.02■□□□□ 0.79
VPS13DQ5THJ4 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS13DQ5THJ4 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VPS13DQ5THJ4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS13DQ5THJ4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS13DQ5THJ4 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS13DQ5THJ4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS13DQ5THJ4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC19.94■□□□□ 0.78
VPS13DQ5THJ4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS13DQ5THJ4 SUZ12P1-203ENST00000578195 985 ntBASIC19.93■□□□□ 0.78
VPS13DQ5THJ4 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS13DQ5THJ4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC19.89■□□□□ 0.78
VPS13DQ5THJ4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS13DQ5THJ4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13DQ5THJ4 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13DQ5THJ4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS13DQ5THJ4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS13DQ5THJ4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS13DQ5THJ4 AC097358.2-201ENST00000607541 1159 ntBASIC19.83■□□□□ 0.77
VPS13DQ5THJ4 RPS2P35-201ENST00000443417 897 ntBASIC19.82■□□□□ 0.76
VPS13DQ5THJ4 SETD8P1-201ENST00000623146 1180 ntBASIC19.81■□□□□ 0.76
VPS13DQ5THJ4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS13DQ5THJ4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC19.79■□□□□ 0.76
VPS13DQ5THJ4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS13DQ5THJ4 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS13DQ5THJ4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS13DQ5THJ4 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
VPS13DQ5THJ4 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS13DQ5THJ4 AC145285.7-201ENST00000614819 1539 ntBASIC19.76■□□□□ 0.75
VPS13DQ5THJ4 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS13DQ5THJ4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13DQ5THJ4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC19.73■□□□□ 0.75
VPS13DQ5THJ4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS13DQ5THJ4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13DQ5THJ4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS13DQ5THJ4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS13DQ5THJ4 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
VPS13DQ5THJ4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13DQ5THJ4 NRG1-221ENST00000614767 762 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS13DQ5THJ4 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VPS13DQ5THJ4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS13DQ5THJ4 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13DQ5THJ4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13DQ5THJ4 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS13DQ5THJ4 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS13DQ5THJ4 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS13DQ5THJ4 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS13DQ5THJ4 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS13DQ5THJ4 AL162393.1-201ENST00000437852 946 ntBASIC19.56■□□□□ 0.72
VPS13DQ5THJ4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VPS13DQ5THJ4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS13DQ5THJ4 CAHM-201ENST00000604200 896 ntBASIC19.55■□□□□ 0.72
VPS13DQ5THJ4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13DQ5THJ4 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13DQ5THJ4 AL391121.1-201ENST00000607967 1349 ntBASIC19.53■□□□□ 0.72
VPS13DQ5THJ4 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS13DQ5THJ4 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13DQ5THJ4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS13DQ5THJ4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
VPS13DQ5THJ4 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13DQ5THJ4 ILK-212ENST00000532063 1617 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS13DQ5THJ4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13DQ5THJ4 HNRNPLP2-201ENST00000568980 1570 ntBASIC19.44■□□□□ 0.7
VPS13DQ5THJ4 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13DQ5THJ4 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13DQ5THJ4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13DQ5THJ4 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS13DQ5THJ4 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS13DQ5THJ4 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS13DQ5THJ4 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS13DQ5THJ4 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS13DQ5THJ4 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
VPS13DQ5THJ4 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
VPS13DQ5THJ4 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC19.33■□□□□ 0.69
VPS13DQ5THJ4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
VPS13DQ5THJ4 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS13DQ5THJ4 AP006261.1-201ENST00000584783 668 ntBASIC19.32■□□□□ 0.68
VPS13DQ5THJ4 AL133380.1-201ENST00000506013 324 ntBASIC19.31■□□□□ 0.68
VPS13DQ5THJ4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms