Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
NKX3-2P78367 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC32.94■■■□□ 2.86
NKX3-2P78367 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.93■■■□□ 2.86
NKX3-2P78367 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
NKX3-2P78367 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.9■■■□□ 2.86
NKX3-2P78367 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.9■■■□□ 2.86
NKX3-2P78367 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
NKX3-2P78367 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.81■■■□□ 2.84
NKX3-2P78367 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.8■■■□□ 2.84
NKX3-2P78367 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.8■■■□□ 2.84
NKX3-2P78367 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
NKX3-2P78367 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.74■■■□□ 2.83
NKX3-2P78367 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC32.74■■■□□ 2.83
NKX3-2P78367 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC32.73■■■□□ 2.83
NKX3-2P78367 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
NKX3-2P78367 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC32.66■■■□□ 2.82
NKX3-2P78367 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.65■■■□□ 2.82
NKX3-2P78367 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
NKX3-2P78367 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
NKX3-2P78367 EBPL-203ENST00000378270 579 ntTSL 2 BASIC32.62■■■□□ 2.81
NKX3-2P78367 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC32.62■■■□□ 2.81
NKX3-2P78367 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC32.6■■■□□ 2.81
NKX3-2P78367 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC32.57■■■□□ 2.8
NKX3-2P78367 RARRES2P7-201ENST00000567349 469 ntBASIC32.56■■■□□ 2.8
NKX3-2P78367 ILK-212ENST00000532063 1617 ntTSL 2 BASIC32.54■■■□□ 2.8
NKX3-2P78367 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC32.53■■■□□ 2.8
NKX3-2P78367 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC32.52■■■□□ 2.8
NKX3-2P78367 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC32.52■■■□□ 2.8
NKX3-2P78367 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
NKX3-2P78367 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC32.47■■■□□ 2.79
NKX3-2P78367 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC32.43■■■□□ 2.78
NKX3-2P78367 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC32.41■■■□□ 2.78
NKX3-2P78367 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC32.41■■■□□ 2.78
NKX3-2P78367 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC32.39■■■□□ 2.78
NKX3-2P78367 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC32.39■■■□□ 2.78
NKX3-2P78367 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
NKX3-2P78367 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC32.37■■■□□ 2.77
NKX3-2P78367 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC32.36■■■□□ 2.77
NKX3-2P78367 AC136428.2-201ENST00000563187 214 ntBASIC32.35■■■□□ 2.77
NKX3-2P78367 AC097358.2-201ENST00000607541 1159 ntBASIC32.35■■■□□ 2.77
NKX3-2P78367 SETD8P1-201ENST00000623146 1180 ntBASIC32.3■■■□□ 2.76
NKX3-2P78367 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC32.29■■■□□ 2.76
NKX3-2P78367 KLF16-203ENST00000592313 508 ntTSL 3 BASIC32.29■■■□□ 2.76
NKX3-2P78367 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC32.29■■■□□ 2.76
NKX3-2P78367 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
NKX3-2P78367 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
NKX3-2P78367 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
NKX3-2P78367 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC32.23■■■□□ 2.75
NKX3-2P78367 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
NKX3-2P78367 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC32.22■■■□□ 2.75
NKX3-2P78367 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
NKX3-2P78367 SUZ12P1-203ENST00000578195 985 ntBASIC32.21■■■□□ 2.75
NKX3-2P78367 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
NKX3-2P78367 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC32.18■■■□□ 2.74
NKX3-2P78367 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
NKX3-2P78367 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
NKX3-2P78367 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC32.13■■■□□ 2.73
NKX3-2P78367 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
NKX3-2P78367 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC32.08■■■□□ 2.73
NKX3-2P78367 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
NKX3-2P78367 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC32.06■■■□□ 2.72
NKX3-2P78367 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC32.04■■■□□ 2.72
NKX3-2P78367 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC32.02■■■□□ 2.72
NKX3-2P78367 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
NKX3-2P78367 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC32■■■□□ 2.71
NKX3-2P78367 MVK-208ENST00000539696 608 ntTSL 5 BASIC32■■■□□ 2.71
NKX3-2P78367 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC32■■■□□ 2.71
NKX3-2P78367 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.98■■■□□ 2.71
NKX3-2P78367 AC145285.7-201ENST00000614819 1539 ntBASIC31.97■■■□□ 2.71
NKX3-2P78367 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.97■■■□□ 2.71
NKX3-2P78367 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
NKX3-2P78367 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
NKX3-2P78367 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
NKX3-2P78367 RPS2P35-201ENST00000443417 897 ntBASIC31.88■■■□□ 2.69
NKX3-2P78367 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
NKX3-2P78367 CAHM-201ENST00000604200 896 ntBASIC31.86■■■□□ 2.69
NKX3-2P78367 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
NKX3-2P78367 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
NKX3-2P78367 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
NKX3-2P78367 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.79■■■□□ 2.68
NKX3-2P78367 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
NKX3-2P78367 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
NKX3-2P78367 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.74■■■□□ 2.67
NKX3-2P78367 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
NKX3-2P78367 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
NKX3-2P78367 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
NKX3-2P78367 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.72■■■□□ 2.67
NKX3-2P78367 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
NKX3-2P78367 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
NKX3-2P78367 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.69■■■□□ 2.66
NKX3-2P78367 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.68■■■□□ 2.66
NKX3-2P78367 AL391121.1-201ENST00000607967 1349 ntBASIC31.68■■■□□ 2.66
NKX3-2P78367 AL133380.1-201ENST00000506013 324 ntBASIC31.66■■■□□ 2.66
NKX3-2P78367 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
NKX3-2P78367 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NKX3-2P78367 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
NKX3-2P78367 AP006261.1-201ENST00000584783 668 ntBASIC31.61■■■□□ 2.65
NKX3-2P78367 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.61■■■□□ 2.65
NKX3-2P78367 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.6■■■□□ 2.65
NKX3-2P78367 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms