Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
SOX3P41225 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
SOX3P41225 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SOX3P41225 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
SOX3P41225 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.86■■□□□ 1.89
SOX3P41225 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SOX3P41225 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SOX3P41225 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.79■■□□□ 1.88
SOX3P41225 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26.77■■□□□ 1.88
SOX3P41225 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC26.76■■□□□ 1.87
SOX3P41225 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
SOX3P41225 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC26.71■■□□□ 1.87
SOX3P41225 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.87
SOX3P41225 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC26.68■■□□□ 1.86
SOX3P41225 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SOX3P41225 DYNLL1-208ENST00000550178 581 ntBASIC26.67■■□□□ 1.86
SOX3P41225 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.66■■□□□ 1.86
SOX3P41225 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC26.65■■□□□ 1.86
SOX3P41225 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SOX3P41225 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
SOX3P41225 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC26.63■■□□□ 1.85
SOX3P41225 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.63■■□□□ 1.85
SOX3P41225 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SOX3P41225 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
SOX3P41225 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC26.61■■□□□ 1.85
SOX3P41225 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC26.58■■□□□ 1.85
SOX3P41225 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
SOX3P41225 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SOX3P41225 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SOX3P41225 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SOX3P41225 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC26.56■■□□□ 1.84
SOX3P41225 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SOX3P41225 AC145285.7-201ENST00000614819 1539 ntBASIC26.55■■□□□ 1.84
SOX3P41225 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SOX3P41225 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
SOX3P41225 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.53■■□□□ 1.84
SOX3P41225 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC26.52■■□□□ 1.84
SOX3P41225 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
SOX3P41225 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SOX3P41225 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
SOX3P41225 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.49■■□□□ 1.83
SOX3P41225 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.49■■□□□ 1.83
SOX3P41225 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
SOX3P41225 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
SOX3P41225 AL031258.1-201ENST00000623562 325 ntBASIC26.46■■□□□ 1.83
SOX3P41225 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.83
SOX3P41225 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
SOX3P41225 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SOX3P41225 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SOX3P41225 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SOX3P41225 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
SOX3P41225 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SOX3P41225 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC26.38■■□□□ 1.81
SOX3P41225 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
SOX3P41225 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SOX3P41225 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SOX3P41225 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC26.35■■□□□ 1.81
SOX3P41225 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SOX3P41225 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SOX3P41225 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SOX3P41225 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
SOX3P41225 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC26.32■■□□□ 1.8
SOX3P41225 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SOX3P41225 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SOX3P41225 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC26.28■■□□□ 1.8
SOX3P41225 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
SOX3P41225 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.27■■□□□ 1.8
SOX3P41225 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.26■■□□□ 1.79
SOX3P41225 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SOX3P41225 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.24■■□□□ 1.79
SOX3P41225 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.24■■□□□ 1.79
SOX3P41225 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.24■■□□□ 1.79
SOX3P41225 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SOX3P41225 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
SOX3P41225 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.2■■□□□ 1.78
SOX3P41225 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.18■■□□□ 1.78
SOX3P41225 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.18■■□□□ 1.78
SOX3P41225 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.18■■□□□ 1.78
SOX3P41225 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC26.18■■□□□ 1.78
SOX3P41225 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
SOX3P41225 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SOX3P41225 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SOX3P41225 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SOX3P41225 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
SOX3P41225 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC26.14■■□□□ 1.77
SOX3P41225 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.77
SOX3P41225 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.13■■□□□ 1.77
SOX3P41225 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
SOX3P41225 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SOX3P41225 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SOX3P41225 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.76
SOX3P41225 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SOX3P41225 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
SOX3P41225 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.07■■□□□ 1.76
SOX3P41225 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.06■■□□□ 1.76
SOX3P41225 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SOX3P41225 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.02■■□□□ 1.76
SOX3P41225 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
SOX3P41225 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC26.01■■□□□ 1.75
SOX3P41225 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC26■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms