Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TRAP1-211ENST00000574941 558 ntTSL 425.26■■□□□ 1.633e-12■■■■■ 39.8
YBX3P16989 TRAP1-206ENST00000571538 587 ntTSL 412.56□□□□□ -0.43e-12■■■■■ 39.8
YBX3P16989 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.135e-8■■■■■ 39.7
YBX3P16989 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.692e-8■■■■■ 39.6
YBX3P16989 FBXO6-202ENST00000449067 928 ntTSL 317.97■□□□□ 0.472e-8■■■■■ 39.6
YBX3P16989 HPCAL1-205ENST00000423674 586 ntTSL 430.35■■■□□ 2.455e-7■■■■■ 39.5
YBX3P16989 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.765e-7■■■■■ 39.5
YBX3P16989 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.615e-7■■■■■ 39.5
YBX3P16989 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.611e-9■■■■■ 39.5
YBX3P16989 APIP-202ENST00000527830 1042 ntTSL 223.14■■□□□ 1.291e-9■■■■■ 39.5
YBX3P16989 APIP-203ENST00000532428 4583 ntTSL 1 (best)5.52□□□□□ -1.531e-9■■■■■ 39.5
YBX3P16989 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 35e-14■■■■■ 39.4
YBX3P16989 DCUN1D5-210ENST00000531571 1535 ntTSL 533.74■■■□□ 2.995e-14■■■■■ 39.4
YBX3P16989 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC22.27■■□□□ 1.165e-14■■■■■ 39.4
YBX3P16989 DCUN1D5-207ENST00000529281 1310 ntTSL 221.43■■□□□ 1.025e-14■■■■■ 39.4
YBX3P16989 DCUN1D5-203ENST00000527260 808 ntTSL 58.3□□□□□ -1.085e-14■■■■■ 39.4
YBX3P16989 INS-IGF2-205ENST00000641326 2861 ntAPPRIS P1 BASIC12.91□□□□□ -0.341e-323■■■■■ 39.3
YBX3P16989 GPT2-204ENST00000562801 2092 ntTSL 217.48■□□□□ 0.391e-8■■■■■ 39.3
YBX3P16989 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.341e-323■■■■■ 39.1
YBX3P16989 SLC44A2-207ENST00000588409 589 ntTSL 412.73□□□□□ -0.372e-13■■■■■ 38.9
YBX3P16989 PRDX6-203ENST00000470017 859 ntTSL 29.39□□□□□ -0.911e-31■■■■■ 38.9
YBX3P16989 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.974e-32■■■■■ 38.9
YBX3P16989 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC21.65■■□□□ 1.063e-21■■■■■ 38.8
YBX3P16989 PSMD5-206ENST00000476949 382 ntTSL 219.93■□□□□ 0.783e-21■■■■■ 38.8
YBX3P16989 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC18.62■□□□□ 0.573e-21■■■■■ 38.8
YBX3P16989 PSMD5-205ENST00000471789 567 ntTSL 216.22■□□□□ 0.193e-21■■■■■ 38.8
YBX3P16989 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.49■□□□□ 0.232e-13■■■■■ 38.7
YBX3P16989 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.52e-13■■■■■ 38.7
YBX3P16989 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.52e-13■■■■■ 38.7
YBX3P16989 TFE3-203ENST00000487451 1058 ntTSL 322.92■■□□□ 1.268e-10■■■■■ 38.6
YBX3P16989 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.18e-10■■■■■ 38.6
YBX3P16989 TFE3-204ENST00000493583 3279 ntTSL 213.96□□□□□ -0.188e-10■■■■■ 38.6
YBX3P16989 TFE3-202ENST00000481606 439 ntTSL 27.82□□□□□ -1.168e-10■■■■■ 38.6
YBX3P16989 EXT2-209ENST00000532479 580 ntTSL 424.24■■□□□ 1.476e-12■■■■■ 38.5
YBX3P16989 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.381e-323■■■■■ 38.3
YBX3P16989 SRSF7-206ENST00000431066 1847 ntTSL 512.95□□□□□ -0.342e-23■■■■■ 38.2
YBX3P16989 STK11-203ENST00000585748 746 ntTSL 316.39■□□□□ 0.214e-12■■■■■ 38.2
YBX3P16989 HMGB2P1-201ENST00000591146 634 ntBASIC5.13□□□□□ -1.594e-12■■■■■ 38.2
YBX3P16989 NSA2-203ENST00000514918 645 ntTSL 215.7■□□□□ 0.16e-8■■■■■ 38.1
YBX3P16989 NSA2-202ENST00000513356 797 ntTSL 310.55□□□□□ -0.726e-8■■■■■ 38.1
YBX3P16989 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.516e-9■■■■■ 38.1
YBX3P16989 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.241e-7■■■■■ 38
YBX3P16989 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.244e-7■■■■■ 38
YBX3P16989 NSA2-201ENST00000296802 1199 ntTSL 5 BASIC14.71□□□□□ -0.056e-8■■■■■ 38
YBX3P16989 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.086e-8■■■■■ 38
YBX3P16989 HDLBP-211ENST00000425989 530 ntTSL 511.12□□□□□ -0.633e-12■■■■■ 38
YBX3P16989 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.53■■□□□ 1.363e-7■■■■■ 37.9
YBX3P16989 RILPL1-201ENST00000340724 2389 ntTSL 515.05■□□□□ -03e-7■■■■■ 37.9
YBX3P16989 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.033e-7■■■■■ 37.9
YBX3P16989 MIR3605-201ENST00000583214 100 ntBASIC2.99□□□□□ -1.931e-9■■■■■ 37.7
YBX3P16989 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC20.11■□□□□ 0.816e-7■■■■■ 37.7
YBX3P16989 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.56□□□□□ -0.082e-6■■■■■ 37.5
YBX3P16989 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC13.67□□□□□ -0.222e-6■■■■■ 37.5
YBX3P16989 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.292e-6■■■■■ 37.5
YBX3P16989 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC28.75■■■□□ 2.195e-29■■■■■ 37.3
YBX3P16989 NSA2-204ENST00000515524 448 ntTSL 26.87□□□□□ -1.314e-12■■■■■ 37.2
YBX3P16989 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.633e-11■■■■■ 37.2
YBX3P16989 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC22.7■■□□□ 1.223e-11■■■■■ 37.2
YBX3P16989 B3GALNT2-206ENST00000494378 1869 ntTSL 222.45■■□□□ 1.193e-11■■■■■ 37.2
YBX3P16989 B3GALNT2-207ENST00000612859 2920 ntTSL 510.97□□□□□ -0.653e-11■■■■■ 37.2
YBX3P16989 B3GALNT2-203ENST00000461994 395 ntTSL 37.18□□□□□ -1.263e-11■■■■■ 37.2
YBX3P16989 ZC3H11A-206ENST00000453771 1892 ntTSL 512.68□□□□□ -0.385e-11■■■■■ 36.9
YBX3P16989 NFIC-208ENST00000589537 977 ntTSL 222■■□□□ 1.112e-6■■■■■ 36.9
YBX3P16989 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC25.34■■□□□ 1.653e-10■■■■■ 36.9
YBX3P16989 SUPT4H1-205ENST00000581166 1401 ntTSL 218.54■□□□□ 0.563e-10■■■■■ 36.9
YBX3P16989 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.533e-10■■■■■ 36.9
YBX3P16989 ANXA2-234ENST00000560495 567 ntTSL 416.26■□□□□ 0.194e-16■■■■■ 36.8
YBX3P16989 ANXA2-211ENST00000558169 557 ntTSL 416.26■□□□□ 0.194e-16■■■■■ 36.8
YBX3P16989 ANXA2-236ENST00000560936 908 ntTSL 214.07□□□□□ -0.164e-16■■■■■ 36.8
YBX3P16989 ANXA2-209ENST00000557986 733 ntTSL 511.83□□□□□ -0.524e-16■■■■■ 36.8
YBX3P16989 ANXA2-235ENST00000560546 574 ntTSL 28.09□□□□□ -1.114e-16■■■■■ 36.8
YBX3P16989 SZRD1-206ENST00000475078 490 ntTSL 419.69■□□□□ 0.747e-12■■■■■ 36.7
YBX3P16989 SZRD1-208ENST00000476423 567 ntTSL 411.89□□□□□ -0.517e-12■■■■■ 36.7
YBX3P16989 RAB35-204ENST00000540803 551 ntTSL 225.3■■□□□ 1.647e-12■■■■■ 36.7
YBX3P16989 RAB35-206ENST00000544304 2449 ntTSL 221.85■■□□□ 1.097e-12■■■■■ 36.7
YBX3P16989 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.65■□□□□ 0.97e-12■■■■■ 36.7
YBX3P16989 RAB35-203ENST00000538903 643 ntTSL 319.97■□□□□ 0.797e-12■■■■■ 36.7
YBX3P16989 RAB35-205ENST00000543364 578 ntTSL 319.88■□□□□ 0.777e-12■■■■■ 36.7
YBX3P16989 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.317e-12■■■■■ 36.7
YBX3P16989 PLD3-210ENST00000480030 903 ntTSL 213.34□□□□□ -0.277e-12■■■■■ 36.7
YBX3P16989 SRSF7-208ENST00000443213 1903 ntTSL 512.94□□□□□ -0.342e-23■■■■■ 36.7
YBX3P16989 SRSF7-205ENST00000425941 1944 ntTSL 512.14□□□□□ -0.472e-23■■■■■ 36.7
YBX3P16989 SRSF7-201ENST00000313117 2489 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.512e-23■■■■■ 36.7
YBX3P16989 SRSF7-209ENST00000446327 2453 ntTSL 2 BASIC11.55□□□□□ -0.562e-23■■■■■ 36.7
YBX3P16989 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC10.21□□□□□ -0.772e-23■■■■■ 36.7
YBX3P16989 SRSF7-204ENST00000425778 2857 ntTSL 29.2□□□□□ -0.942e-23■■■■■ 36.7
YBX3P16989 RAD51D-213ENST00000587977 1732 ntTSL 226.16■■□□□ 1.783e-11■■■■■ 36.5
YBX3P16989 RAD51D-211ENST00000586210 1194 ntTSL 1 (best)25.61■■□□□ 1.693e-11■■■■■ 36.5
YBX3P16989 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC22.54■■□□□ 1.23e-11■■■■■ 36.5
YBX3P16989 AC004223.3-202ENST00000591723 676 ntTSL 521.76■■□□□ 1.073e-11■■■■■ 36.5
YBX3P16989 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC21.25■□□□□ 0.993e-11■■■■■ 36.5
YBX3P16989 RAD51D-209ENST00000586044 1571 ntTSL 1 (best)21.1■□□□□ 0.973e-11■■■■■ 36.5
YBX3P16989 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.62■□□□□ 0.893e-11■■■■■ 36.5
YBX3P16989 RAD51D-216ENST00000588594 1409 ntTSL 219.93■□□□□ 0.783e-11■■■■■ 36.5
YBX3P16989 AC004223.3-203ENST00000592181 787 ntAPPRIS ALT2 TSL 518.91■□□□□ 0.623e-11■■■■■ 36.5
YBX3P16989 RAD51D-221ENST00000592577 762 ntTSL 516.86■□□□□ 0.293e-11■■■■■ 36.5
YBX3P16989 RAD51D-212ENST00000587405 676 ntTSL 516.49■□□□□ 0.233e-11■■■■■ 36.5
YBX3P16989 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.9■□□□□ 0.143e-11■■■■■ 36.5
YBX3P16989 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.123e-11■■■■■ 36.5
YBX3P16989 RAD51D-215ENST00000588372 2214 ntTSL 512.74□□□□□ -0.373e-11■■■■■ 36.5
Retrieved 100 of 29,075 protein–RNA pairs in 100.7 ms