Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC27.16■■□□□ 1.94
PDGFAP04085 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC27.15■■□□□ 1.94
PDGFAP04085 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC27.14■■□□□ 1.94
PDGFAP04085 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
PDGFAP04085 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PDGFAP04085 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
PDGFAP04085 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
PDGFAP04085 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC27.07■■□□□ 1.92
PDGFAP04085 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC27.07■■□□□ 1.92
PDGFAP04085 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC27.04■■□□□ 1.92
PDGFAP04085 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC27.02■■□□□ 1.92
PDGFAP04085 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
PDGFAP04085 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
PDGFAP04085 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC27■■□□□ 1.91
PDGFAP04085 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC27■■□□□ 1.91
PDGFAP04085 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC26.99■■□□□ 1.91
PDGFAP04085 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC26.98■■□□□ 1.91
PDGFAP04085 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.98■■□□□ 1.91
PDGFAP04085 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.98■■□□□ 1.91
PDGFAP04085 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC26.96■■□□□ 1.91
PDGFAP04085 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
PDGFAP04085 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.94■■□□□ 1.9
PDGFAP04085 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.94■■□□□ 1.9
PDGFAP04085 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.92■■□□□ 1.9
PDGFAP04085 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC26.91■■□□□ 1.9
PDGFAP04085 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.9
PDGFAP04085 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
PDGFAP04085 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.85■■□□□ 1.89
PDGFAP04085 RARRES2P7-201ENST00000567349 469 ntBASIC26.82■■□□□ 1.88
PDGFAP04085 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.82■■□□□ 1.88
PDGFAP04085 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PDGFAP04085 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.8■■□□□ 1.88
PDGFAP04085 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PDGFAP04085 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
PDGFAP04085 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PDGFAP04085 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.75■■□□□ 1.87
PDGFAP04085 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
PDGFAP04085 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.67■■□□□ 1.86
PDGFAP04085 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
PDGFAP04085 AC097358.2-201ENST00000607541 1159 ntBASIC26.65■■□□□ 1.86
PDGFAP04085 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
PDGFAP04085 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.64■■□□□ 1.86
PDGFAP04085 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.62■■□□□ 1.85
PDGFAP04085 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
PDGFAP04085 AC136428.2-201ENST00000563187 214 ntBASIC26.61■■□□□ 1.85
PDGFAP04085 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
PDGFAP04085 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.58■■□□□ 1.85
PDGFAP04085 SETD8P1-201ENST00000623146 1180 ntBASIC26.57■■□□□ 1.84
PDGFAP04085 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.56■■□□□ 1.84
PDGFAP04085 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PDGFAP04085 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
PDGFAP04085 SUZ12P1-203ENST00000578195 985 ntBASIC26.51■■□□□ 1.83
PDGFAP04085 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.49■■□□□ 1.83
PDGFAP04085 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PDGFAP04085 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PDGFAP04085 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.48■■□□□ 1.83
PDGFAP04085 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
PDGFAP04085 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PDGFAP04085 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
PDGFAP04085 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
PDGFAP04085 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PDGFAP04085 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC26.44■■□□□ 1.82
PDGFAP04085 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
PDGFAP04085 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.42■■□□□ 1.82
PDGFAP04085 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC26.42■■□□□ 1.82
PDGFAP04085 ILK-212ENST00000532063 1617 ntTSL 2 BASIC26.41■■□□□ 1.82
PDGFAP04085 RPS2P35-201ENST00000443417 897 ntBASIC26.41■■□□□ 1.82
PDGFAP04085 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.38■■□□□ 1.81
PDGFAP04085 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PDGFAP04085 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PDGFAP04085 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC26.34■■□□□ 1.81
PDGFAP04085 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PDGFAP04085 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
PDGFAP04085 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PDGFAP04085 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC26.28■■□□□ 1.8
PDGFAP04085 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PDGFAP04085 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC26.27■■□□□ 1.8
PDGFAP04085 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC26.27■■□□□ 1.8
PDGFAP04085 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PDGFAP04085 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PDGFAP04085 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
PDGFAP04085 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
PDGFAP04085 AC145285.7-201ENST00000614819 1539 ntBASIC26.21■■□□□ 1.79
PDGFAP04085 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PDGFAP04085 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC26.18■■□□□ 1.78
PDGFAP04085 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
PDGFAP04085 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC26.17■■□□□ 1.78
PDGFAP04085 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
PDGFAP04085 CAHM-201ENST00000604200 896 ntBASIC26.16■■□□□ 1.78
PDGFAP04085 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.77
PDGFAP04085 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PDGFAP04085 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PDGFAP04085 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.11■■□□□ 1.77
PDGFAP04085 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC26.09■■□□□ 1.77
PDGFAP04085 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
PDGFAP04085 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
PDGFAP04085 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC26.06■■□□□ 1.76
PDGFAP04085 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
PDGFAP04085 AL162393.1-201ENST00000437852 946 ntBASIC26.04■■□□□ 1.76
PDGFAP04085 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 218.2 ms