Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC38.03■■■■□ 3.68
PTCD1O75127 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC38.01■■■■□ 3.68
PTCD1O75127 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC37.98■■■■□ 3.67
PTCD1O75127 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC37.96■■■■□ 3.67
PTCD1O75127 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC37.93■■■■□ 3.66
PTCD1O75127 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC37.93■■■■□ 3.66
PTCD1O75127 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC37.86■■■■□ 3.65
PTCD1O75127 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC37.85■■■■□ 3.65
PTCD1O75127 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC37.84■■■■□ 3.65
PTCD1O75127 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC37.8■■■■□ 3.64
PTCD1O75127 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC37.78■■■■□ 3.64
PTCD1O75127 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC37.76■■■■□ 3.63
PTCD1O75127 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC37.74■■■■□ 3.63
PTCD1O75127 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC37.74■■■■□ 3.63
PTCD1O75127 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC37.74■■■■□ 3.63
PTCD1O75127 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC37.72■■■■□ 3.63
PTCD1O75127 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC37.71■■■■□ 3.63
PTCD1O75127 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC37.65■■■■□ 3.62
PTCD1O75127 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC37.62■■■■□ 3.61
PTCD1O75127 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC37.61■■■■□ 3.61
PTCD1O75127 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC37.6■■■■□ 3.61
PTCD1O75127 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC37.6■■■■□ 3.61
PTCD1O75127 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC37.6■■■■□ 3.61
PTCD1O75127 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC37.58■■■■□ 3.61
PTCD1O75127 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC37.57■■■■□ 3.6
PTCD1O75127 RARRES2P7-201ENST00000567349 469 ntBASIC37.57■■■■□ 3.6
PTCD1O75127 ILK-212ENST00000532063 1617 ntTSL 2 BASIC37.55■■■■□ 3.6
PTCD1O75127 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
PTCD1O75127 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC37.51■■■■□ 3.6
PTCD1O75127 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC37.46■■■■□ 3.59
PTCD1O75127 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC37.46■■■■□ 3.59
PTCD1O75127 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC37.45■■■■□ 3.59
PTCD1O75127 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC37.44■■■■□ 3.58
PTCD1O75127 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC37.42■■■■□ 3.58
PTCD1O75127 EBPL-203ENST00000378270 579 ntTSL 2 BASIC37.39■■■■□ 3.58
PTCD1O75127 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC37.37■■■■□ 3.57
PTCD1O75127 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC37.36■■■■□ 3.57
PTCD1O75127 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC37.3■■■■□ 3.56
PTCD1O75127 AC097358.2-201ENST00000607541 1159 ntBASIC37.3■■■■□ 3.56
PTCD1O75127 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC37.29■■■■□ 3.56
PTCD1O75127 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC37.29■■■■□ 3.56
PTCD1O75127 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC37.27■■■■□ 3.56
PTCD1O75127 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC37.22■■■■□ 3.55
PTCD1O75127 SETD8P1-201ENST00000623146 1180 ntBASIC37.22■■■■□ 3.55
PTCD1O75127 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC37.21■■■■□ 3.55
PTCD1O75127 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
PTCD1O75127 AC136428.2-201ENST00000563187 214 ntBASIC37.21■■■■□ 3.55
PTCD1O75127 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC37.21■■■■□ 3.55
PTCD1O75127 KLF16-203ENST00000592313 508 ntTSL 3 BASIC37.19■■■■□ 3.54
PTCD1O75127 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC37.13■■■■□ 3.53
PTCD1O75127 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC37.09■■■■□ 3.53
PTCD1O75127 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC37.09■■■■□ 3.53
PTCD1O75127 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC37.07■■■■□ 3.52
PTCD1O75127 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC37.07■■■■□ 3.52
PTCD1O75127 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC37.06■■■■□ 3.52
PTCD1O75127 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC37.04■■■■□ 3.52
PTCD1O75127 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC37.04■■■■□ 3.52
PTCD1O75127 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC37.03■■■■□ 3.52
PTCD1O75127 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC37.03■■■■□ 3.52
PTCD1O75127 SUZ12P1-203ENST00000578195 985 ntBASIC37.02■■■■□ 3.52
PTCD1O75127 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC37.01■■■■□ 3.51
PTCD1O75127 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC37■■■■□ 3.51
PTCD1O75127 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC37■■■■□ 3.51
PTCD1O75127 AC145285.7-201ENST00000614819 1539 ntBASIC36.99■■■■□ 3.51
PTCD1O75127 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC36.99■■■■□ 3.51
PTCD1O75127 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC36.96■■■■□ 3.51
PTCD1O75127 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
PTCD1O75127 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC36.92■■■■□ 3.5
PTCD1O75127 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC36.87■■■■□ 3.49
PTCD1O75127 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC36.86■■■■□ 3.49
PTCD1O75127 MVK-208ENST00000539696 608 ntTSL 5 BASIC36.85■■■■□ 3.49
PTCD1O75127 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC36.84■■■■□ 3.49
PTCD1O75127 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC36.8■■■■□ 3.48
PTCD1O75127 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC36.8■■■■□ 3.48
PTCD1O75127 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC36.8■■■■□ 3.48
PTCD1O75127 RPS2P35-201ENST00000443417 897 ntBASIC36.8■■■■□ 3.48
PTCD1O75127 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC36.78■■■■□ 3.48
PTCD1O75127 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC36.76■■■■□ 3.48
PTCD1O75127 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC36.71■■■■□ 3.47
PTCD1O75127 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC36.69■■■■□ 3.46
PTCD1O75127 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC36.68■■■■□ 3.46
PTCD1O75127 CAHM-201ENST00000604200 896 ntBASIC36.66■■■■□ 3.46
PTCD1O75127 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC36.66■■■■□ 3.46
PTCD1O75127 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC36.65■■■■□ 3.46
PTCD1O75127 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC36.64■■■■□ 3.46
PTCD1O75127 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC36.61■■■■□ 3.45
PTCD1O75127 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC36.61■■■■□ 3.45
PTCD1O75127 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC36.6■■■■□ 3.45
PTCD1O75127 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC36.58■■■■□ 3.45
PTCD1O75127 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC36.56■■■■□ 3.44
PTCD1O75127 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC36.52■■■■□ 3.44
PTCD1O75127 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC36.52■■■■□ 3.44
PTCD1O75127 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC36.48■■■■□ 3.43
PTCD1O75127 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC36.47■■■■□ 3.43
PTCD1O75127 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC36.45■■■■□ 3.43
PTCD1O75127 AL391121.1-201ENST00000607967 1349 ntBASIC36.44■■■■□ 3.42
PTCD1O75127 AL133380.1-201ENST00000506013 324 ntBASIC36.44■■■■□ 3.42
PTCD1O75127 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC36.44■■■■□ 3.42
PTCD1O75127 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC36.44■■■■□ 3.42
PTCD1O75127 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC36.42■■■■□ 3.42
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms