Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGA1P17096 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HMGA1P17096 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGA1P17096 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.43■□□□□ 0.22
HMGA1P17096 MIR658-201ENST00000385210 100 ntBASIC16.43■□□□□ 0.22
HMGA1P17096 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.43■□□□□ 0.22
HMGA1P17096 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.43■□□□□ 0.22
HMGA1P17096 CROCCP4-201ENST00000457096 498 ntBASIC16.43■□□□□ 0.22
HMGA1P17096 RPL13AP25-201ENST00000484130 612 ntBASIC16.43■□□□□ 0.22
HMGA1P17096 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HMGA1P17096 SLC25A47P1-201ENST00000531577 414 ntBASIC16.43■□□□□ 0.22
HMGA1P17096 MIR4259-201ENST00000584466 101 ntBASIC16.43■□□□□ 0.22
HMGA1P17096 MIR6805-201ENST00000615055 62 ntBASIC16.43■□□□□ 0.22
HMGA1P17096 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
HMGA1P17096 AC138932.1-201ENST00000534164 6830 ntBASIC16.43■□□□□ 0.22
HMGA1P17096 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGA1P17096 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGA1P17096 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGA1P17096 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.43■□□□□ 0.22
HMGA1P17096 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HMGA1P17096 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HMGA1P17096 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGA1P17096 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGA1P17096 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 LINC02447-202ENST00000501888 2146 ntBASIC16.42■□□□□ 0.22
HMGA1P17096 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGA1P17096 SOCS2P1-201ENST00000417727 557 ntBASIC16.42■□□□□ 0.22
HMGA1P17096 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.42■□□□□ 0.22
HMGA1P17096 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGA1P17096 SNX29P1-201ENST00000548357 1007 ntBASIC16.42■□□□□ 0.22
HMGA1P17096 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.42■□□□□ 0.22
HMGA1P17096 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGA1P17096 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGA1P17096 AC233724.13-201ENST00000598383 410 ntBASIC16.42■□□□□ 0.22
HMGA1P17096 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.42■□□□□ 0.22
HMGA1P17096 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HMGA1P17096 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGA1P17096 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGA1P17096 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
HMGA1P17096 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HMGA1P17096 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGA1P17096 AC018665.1-201ENST00000622927 1362 ntBASIC16.41■□□□□ 0.22
HMGA1P17096 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGA1P17096 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGA1P17096 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
HMGA1P17096 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGA1P17096 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGA1P17096 C1QBPP1-201ENST00000400117 770 ntBASIC16.41■□□□□ 0.22
HMGA1P17096 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGA1P17096 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGA1P17096 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
HMGA1P17096 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.41■□□□□ 0.22
HMGA1P17096 CLUHP6-201ENST00000580789 941 ntBASIC16.41■□□□□ 0.22
HMGA1P17096 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.41■□□□□ 0.22
HMGA1P17096 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.41■□□□□ 0.22
HMGA1P17096 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms